PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g03900
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRF
Protein Properties Length: 238aa    MW: 27243.1 Da    PI: 9.2677
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g03900genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC63.82.5e-20151192243
         WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrksk 43 
                 +ep+rCrRtDGKkWRCs+ v+ ++k+CE+H+hrgr+++r++k
  CA01g03900 151 TEPRRCRRTDGKKWRCSKGVVLNHKYCEKHMHRGRHQRRSRK 192
                 79**********************************999876 PP
2QLQ41.34.7e-1589123337
         QLQ   3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                 FT  Q q++++Q+ +yKy+ a++PvP++L+ +i+k
  CA01g03900  89 FTFLQRQEFEQQLFIYKYIEAGLPVPSHLIIPICK 123
                 9999*****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009510.006687123IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166617.73688123IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.2E-1089122IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166722.333150196IPR014977WRC domain
PfamPF088791.7E-15152191IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MSEDFAVSDI ISIVFICTYQ QQRILKETQX XXXXXXXSSS MELKISPPKN TASRKNCYNE  60
SSGGAKCSIE LGLNLELSYS KYSTNGYGFT FLQRQEFEQQ LFIYKYIEAG LPVPSHLIIP  120
ICKSFTCSFK RLHDVMGYGH LCWEAKSRME TEPRRCRRTD GKKWRCSKGV VLNHKYCEKH  180
MHRGRHQRRS RKCVELTASS NLELSSNSKI NMRVAATQDH QNSEPDTSTF SIAPPIN*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0092761e-60AP009276.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0165B06, complete sequence.
GenBankHG9755201e-60HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016553045.11e-137PREDICTED: growth-regulating factor 12-like isoform X1
TrEMBLA0A2G3AE891e-170A0A2G3AE89_CAPAN; Growth-regulating factor 10
STRINGSolyc08g079800.2.17e-96(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1447199
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.15e-27growth-regulating factor 2