PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g04070
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 281aa    MW: 32364.7 Da    PI: 5.7939
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g04070genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.91.5e-124892554
                HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
         HLH  5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                +   Er+RR+++N++++ Lr ++P+ +      K++Ka+i + A+++I++L
  CA01g04070 48 NIVSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAIDHIQDL 92
                5567*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.71E-1741107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.4444392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.08E-124697No hitNo description
PfamPF000103.8E-104892IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-144998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-1549107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MENISEDYNN YWETAMFLPS EEFDSCFDEA ISSYYDSSSP DGAQSSKNIV SERNRRKKLN  60
ERLFALRAVV PNISKMDKAS IIKDAIDHIQ DLHEQERRIR AEISVLESGR SKKNNDVEFD  120
QDGSFDLKPK RSKRLEQQFD YDSSGSTTRS SPSSSPVDVL ELRVSSMGEK TMVVSLTCSK  180
RRDTMIKVCE VFESLNAKII SANITAFSGR LLKTAFIEVT ESFFSFFFSF FATQIYSFSA  240
LCLIFFLSYS LLRYFAFEMI LTDYENFFKH LKIYMCIHVK *
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2536453e-55AC253645.3 Solanum lycopersicum strain Heinz 1706 chromosome 7 clone slm-51e1 map 7, complete sequence.
GenBankAC2536763e-55AC253676.4 Solanum lycopersicum strain Heinz 1706 chromosome 7 clone sle-50e11 map 7, complete sequence.
GenBankHG9754463e-55HG975446.1 Solanum pennellii chromosome ch07, complete genome.
GenBankHG9755193e-55HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016568388.11e-136PREDICTED: transcription factor bHLH35-like
SwissprotQ2HIV95e-70BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A2G3AEA71e-157A0A2G3AEA7_CAPAN; Transcription factor bHLH35
STRINGXP_009760780.11e-120(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29232451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.24e-71bHLH family protein