PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA01g04770

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

YABBY

Protein Properties

Length: 218aa MW: 24247.3 Da PI: 7.6678

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA01g04770	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	217.3	4.8e-67	17	180	6	170
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsen 104 seq+Cyv+Cn C+t+lavsvP tslfk+vtvrCGhC++ll l +++ +h+++s+ + ++ l+ ++++ +++ ++ ++ + CA01g04770 17 PSEQLCYVHCNNCDTVLAVSVPCTSLFKTVTVRCGHCANLLPGWLLPSTNHHHQLHHFGHSYFSPSHNLLEEISNATPNFLMNQGNSAHDFVLP--ARP 113 68**************************************9999999999999999999887755555444444444444444433333332..356 PP YABBY 105 edeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +++pr+pp ++rPPekrqrvPsaynrfikeeiqrika+nPdishreafsaaaknWahfP+i fgl CA01g04770 114 GFDDLPRPPPvINRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIQFGL 180 6789999999789**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.5E-64	17	180	IPR006780	YABBY protein
SuperFamily	SSF47095	2.36E-8	121	174	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	7.5E-5	128	174	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MSSSNSLSLD HLPPPPPSEQ LCYVHCNNCD TVLAVSVPCT SLFKTVTVRC GHCANLLPGW 60 LLPSTNHHHQ LHHFGHSYFS PSHNLLEEIS NATPNFLMNQ GNSAHDFVLP ARPGFDDLPR 120 PPPVINRPPE KRQRVPSAYN RFIKEEIQRI KAGNPDISHR EAFSAAAKNW AHFPHIQFGL 180 MTDQTVKRTN VRQQDGEDVL MKDGLFSTSA NVSVSPY*

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to be associated with phloem cell differentiation. {ECO:0000269\|PubMed:17676337}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ667760	0.0	KJ667760.1 Solanum sisymbriifolium YAB1 protein mRNA, complete cds.
GenBank	KJ667761	0.0	KJ667761.1 Solanum aethiopicum YAB1 protein mRNA, complete cds.
GenBank	KJ667763	0.0	KJ667763.1 Solanum mammosum YAB1 protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016568967.1	1e-162	PREDICTED: protein YABBY 4-like
Swissprot	A2X7Q3	5e-77	YAB4_ORYSI; Protein YABBY 4
Swissprot	Q6H668	5e-77	YAB4_ORYSJ; Protein YABBY 4
TrEMBL	A0A1U8GCB5	1e-161	A0A1U8GCB5_CAPAN; Protein YABBY 4
TrEMBL	A0A2G3AEN1	1e-161	A0A2G3AEN1_CAPAN; protein YABBY 4-like
STRING	PGSC0003DMT400012083	1e-142	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00180.1	1e-66	YABBY family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yang C,Ma Y,Li J The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway. J. Exp. Bot., 2016. 67(18): p. 5545-5556 [PMID:27578842]