PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g05310
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 90aa    MW: 10023.2 Da    PI: 8.4852
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g05310genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF36.46.5e-12248349
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                ie+k   +v fskR++g+  KA+E S L++a+v  i+f + gk + y
  CA01g05310  2 IESKEACTVAFSKRKKGLDEKAKEYSNLTGADVGFILFTQAGKPHSY 48
                8999**************************************98888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.068152IPR002100Transcription factor, MADS-box
SMARTSM004322.6E-4151IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-17276IPR002100Transcription factor, MADS-box
PfamPF003192.4E-15248IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-51429IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-52950IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
LIESKEACTV AFSKRKKGLD EKAKEYSNLT GADVGFILFT QAGKPHSYGS PSIEKVIDKF  60
HELKQNDSQQ NHTNMSKTNA FEAFEDLRK*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016566538.12e-54PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A2G3AER93e-59A0A2G3AER9_CAPAN; Uncharacterized protein (Fragment)
STRINGPGSC0003DMT4000865541e-25(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14083711
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-14AGAMOUS-like 61