PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA01g05700

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

ERF

Protein Properties

Length: 230aa MW: 25490.4 Da PI: 6.5101

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA01g05700	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.3	9.3e-19	50	100	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+ +++g+ CA01g05700 50 LYHGVRRRS-WGKWVSEIREPRK---KSRIWLGTFATPEMAARAHDVAAIAIKGH 100 69**887.******843...6********************999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	2.9E-13	49	100	IPR001471	AP2/ERF domain
CDD	cd00018	1.34E-31	49	109	No hit	No description
PROSITE profile	PS51032	22.339	50	107	IPR001471	AP2/ERF domain
SMART	SM00380	9.2E-35	50	113	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.4E-30	50	108	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	4.18E-21	50	108	IPR016177	DNA-binding domain
PRINTS	PR00367	1.2E-9	51	62	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.2E-9	73	89	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MEQHQSPTTF NNNKQTSSSS LTKRPITLTS SKQETNHKKN KKIDGSKHPL YHGVRRRSWG 60 KWVSEIREPR KKSRIWLGTF ATPEMAARAH DVAAIAIKGH VALLNFPELA QQFPKPASKC 120 AKDVQTAAAK AAALDISPRN SMEVPCSPYG ETESTESSLG SSNDDPFLDL PDLLMDLTQK 180 FDEVCHYNSS WDLAGAGSGS NDSCEFWPEE DLYLLDYSHE TALEVPQLQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	8e-19	45	107	9	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975520	2e-93	HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016553396.1	1e-172	PREDICTED: ethylene-responsive transcription factor ERF039-like
Swissprot	Q8LBQ7	2e-45	ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBL	A0A2G3AEX5	1e-171	A0A2G3AEX5_CAPAN; Ethylene-responsive transcription factor
STRING	PGSC0003DMT400012314	1e-103	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA212	24	225

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11590.1	9e-36	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]