PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g07270
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 207aa    MW: 22790.9 Da    PI: 5.5572
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g07270genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.57.6e-061371655
                HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                +N+ ++ Lr+l+P++   + ++ + a+i+  A+e++k+L+
  CA01g07270  1 MNEHLAVLRSLMPES---YVQRGDQASIVGGAIEFVKELE 37
                8**************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.525136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-5148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-8155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.96E-6141No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MNEHLAVLRS LMPESYVQRG DQASIVGGAI EFVKELEHIL QSLESKKFIL LQQQQRGIGT  60
DDGGCDGEAP HTTSGEISAP TTEYFSTPFA QFFSYPQYTC SQIPNKYTSK SKAAIADIEV  120
TLIETHANVR ILSRRRFRQL SKLVAAFQSL YLTVLHLNVT TLDPLVLYSI SAKVEEGCQL  180
NSADDIAGAV HHMLRIIEEE AATLSC*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ2612331e-145GQ261233.1 Solanum lycopersicum cultivar Rio Grande PtoR Hop-interacting protein THI018 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016572936.11e-151PREDICTED: transcription factor bHLH71-like
SwissprotQ9C7T41e-60BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A1U8GNV21e-149A0A1U8GNV2_CAPAN; transcription factor bHLH71-like
STRINGXP_009631535.11e-121(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56322436
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.16e-63bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]