PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g07540
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family HSF
Protein Properties Length: 497aa    MW: 55089.3 Da    PI: 4.5178
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g07540genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.36.7e-35281192102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+++++++sws++ nsfvv+d+ efa+++Lp yFkh+nf+SFvRQLn+YgF+kv ++          w+F+++ F +g+k+ll++i 
    CA01g07540  28 FLMKTYDMVDDPSTDKIVSWSSTDNSFVVWDPPEFARELLPMYFKHNNFSSFVRQLNTYGFRKVGSDL---------WKFSNDGFIRGQKHLLRNIS 115
                   9********************999****************************************9887.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
    CA01g07540 116 RRKP 119
                   *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.9E-6024117IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.79E-3624117IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.3E-3824117IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.5E-192851IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.4E-3128117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-196678IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406791IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-197991IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MGSASMEDAG EASPXAAPMS SSNAPPPFLM KTYDMVDDPS TDKIVSWSST DNSFVVWDPP  60
EFARELLPMY FKHNNFSSFV RQLNTYGFRK VGSDLWKFSN DGFIRGQKHL LRNISRRKPA  120
HGQSQQQQLH GQSASVGVCV EVGKFGLEEE VERLKRDKNV LMLELVKLRQ HQQNTDNQMQ  180
TVVQSLHIME QRQQQMMSFL AKAVNSPGFL AQFVQQQNES NKHMIERSKK RRIGQDNPSG  240
DLSVSPADGQ LVKYQPVMKE AAKAMLRQIT KLDSSPRLES LSNSPESLLI GDGSPQCKSL  300
DGGSNNQISG VTLQEVPPAS PQPFASATSA VAGQSSFSAN IQFSESSSPV GAQDPPVLLS  360
PSDMIMPEPS QFQEIVPENN MDINGSQTGI DSFMDSILGR NGKLPSEIDT FSPDLQTEWQ  420
STLMDDIGEL PSVGDPFWEK FLQNLFPTET EEMDSLEVED IESTETKPLE NGRDNVQHME  480
DLTEQMEQLT SNSKKV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-2611173129Heat shock factor protein 1
5d5v_B7e-2611173129Heat shock factor protein 1
5d5v_D7e-2611173129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016554315.10.0PREDICTED: heat shock factor protein HSF8-like
SwissprotQ401520.0HSF8_SOLLC; Heat shock factor protein HSF8
TrEMBLA0A2G3AFS00.0A0A2G3AFS0_CAPAN; Heat shock factor protein HSF8
STRINGSolyc08g076590.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64131931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-117heat shock transcription factor A1D
Publications ? help Back to Top
  1. Zhu B, et al.
    Identification and characterization of a novel heat shock transcription factor gene, GmHsfA1, in soybeans (Glycine max).
    J. Plant Res., 2006. 119(3): p. 247-56
    [PMID:16570125]
  2. Cai SY, et al.
    HsfA1a upregulates melatonin biosynthesis to confer cadmium tolerance in tomato plants.
    J. Pineal Res., 2017.
    [PMID:28095626]
  3. Zhou J, et al.
    Heat Shock Factor HsfA1a Is Essential for R Gene-Mediated Nematode Resistance and Triggers H2O2 Production1.
    Plant Physiol., 2018. 176(3): p. 2456-2471
    [PMID:29339397]