PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA01g08080

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

BBR-BPC

Protein Properties

Length: 146aa MW: 15785.1 Da PI: 10.2109

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA01g08080	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	185.3	7.5e-57	6	145	156	301
GAGA_bind 156 akkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaR 254 +++ k k +++++ks++skk++ ++++ ++ +kk + s D s+lP+P CsCtG++r+CYk G GGWqS+CCtt++S yPLP ++ ++g R CA01g08080 6 ETVSKLLKVERPENKSSASKKTKGESRCG-EATVTKKPKSV----ASADFSGLPPPFCSCTGVSRKCYKCG-GGWQSSCCTTSLSEYPLPWNPSKPGYR 98 55666777777877777777777777765.55556666654....589*******************99.9********************** PP GAGA_bind 255 iagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 ++grKmS+ga++klL La+eG dlsnpvDLk+hWAkHG nkf ti+ CA01g08080 99 LTGRKMSNGAYNKLLFTLATEGCDLSNPVDLKNHWAKHGSNKFTTIK 145 ********************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	5.9E-19	1	145	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	6.8E-51	13	145	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
MKGIRETVSK LLKVERPENK SSASKKTKGE SRCGEATVTK KPKSVASADF SGLPPPFCSC 60 TGVSRKCYKC GGGWQSSCCT TSLSEYPLPW NPSKPGYRLT GRKMSNGAYN KLLFTLATEG 120 CDLSNPVDLK NHWAKHGSNK FTTIK*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP009521	1e-126	AP009521.1 Solanum lycopersicum DNA, chromosome 8, clone: C08SLe0068N03, complete sequence.
GenBank	AP010257	1e-126	AP010257.1 Solanum lycopersicum DNA, chromosome 8, clone: C08HBa0172P19, complete sequence.
GenBank	AP010798	1e-126	AP010798.1 Solanum lycopersicum DNA, chromosome 8, clone: C08HBa0011I05, complete sequence.
GenBank	FJ982306	1e-126	FJ982306.1 Solanum lycopersicum GAGA-binding transcriptional activator (BBR/BPC3) mRNA, complete cds.
GenBank	FJ982307	1e-126	FJ982307.1 Solanum lycopersicum GAGA-binding transcriptional activator (BBR/BPC3) gene, complete cds.
GenBank	HG975520	1e-126	HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016571711.1	1e-100	PREDICTED: protein BASIC PENTACYSTEINE7-like
Refseq	XP_016571717.1	1e-100	PREDICTED: protein BASIC PENTACYSTEINE7-like
Swissprot	O82286	2e-49	BPC7_ARATH; Protein BASIC PENTACYSTEINE7
TrEMBL	A0A2G3AFR7	1e-102	A0A2G3AFR7_CAPAN; Protein BASIC PENTACYSTEINE7
STRING	PGSC0003DMT400024019	1e-84	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13714	14	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35550.4	7e-52	basic pentacysteine 7