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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | CA01g10190 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 72aa MW: 8284.25 Da PI: 4.6724 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 37 | 1.1e-11 | 33 | 70 | 1 | 41 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkr 41
kfY +YA + GFsvr+s+s++ +++i++++fvCskeg+r
CA01g10190 33 KFYLDYADRSGFSVRISRSRT---DKSIIDQEFVCSKEGFR 70
6***************98666...599************98 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 7.5E-9 | 33 | 70 | IPR004330 | FAR1 DNA binding domain |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 72 aa Download sequence Send to blast |
MNAVVPFTPQ FDNEETRVPY IGMEFQSPDI AYKFYLDYAD RSGFSVRISR SRTDKSIIDQ 60 EFVCSKEGFR S* |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_025884696.1 | 5e-30 | protein FAR1-RELATED SEQUENCE 11-like | ||||
| Refseq | XP_025884722.1 | 3e-29 | protein FAR1-RELATED SEQUENCE 5-like | ||||
| Refseq | XP_025888960.1 | 4e-28 | protein FAR1-RELATED SEQUENCE 5-like | ||||
| TrEMBL | A0A2G3AGI3 | 2e-45 | A0A2G3AGI3_CAPAN; Uncharacterized protein | ||||
| STRING | Solyc02g092170.1.1 | 3e-30 | (Solanum lycopersicum) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA645 | 8 | 60 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G18960.1 | 3e-13 | FAR1-related sequence 12 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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