PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA01g11190

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LBD

Protein Properties

Length: 162aa MW: 17569.3 Da PI: 7.3631

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA01g11190	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126.2	1.6e-39	13	113	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C aCk+lrrkC+k+C++apyf +eq +++fa+vhk+FGasn +kll ++p+++r +++ +l+yeA ar+rdPvyG+vg+i++lqqq +l+aela+++ CA01g11190 13 PCGACKFLRRKCVKGCIFAPYFDSEQgMAHFAAVHKVFGASNASKLLLTIPPNKRLETVVTLCYEALARVRDPVYGCVGHIFTLQQQAVTLQAELAYVQ 111 7*********************9988*******************************************************************99 PP DUF260 99 ee 100 ++ CA01g11190 112 AR 113 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.206	12	114	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.9E-38	13	111	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
METKNMRSGG GGPCGACKFL RRKCVKGCIF APYFDSEQGM AHFAAVHKVF GASNASKLLL 60 TIPPNKRLET VVTLCYEALA RVRDPVYGCV GHIFTLQQQA VTLQAELAYV QARISTLQQH 120 HLPMPPTQTP SQAEASSVCI DPSIDITDLC NVLDQQLDDS M*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-37	9	107	7	104	LOB family transfactor Ramosa2.1
5ly0_B	1e-37	9	107	7	104	LOB family transfactor Ramosa2.1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016554780.1	1e-118	PREDICTED: LOB domain-containing protein 19
Swissprot	O81322	1e-62	LBD31_ARATH; LOB domain-containing protein 31
TrEMBL	A0A1U8FGA2	1e-117	A0A1U8FGA2_CAPAN; LOB domain-containing protein 31
TrEMBL	A0A2G2XNX8	1e-117	A0A2G2XNX8_CAPBA; LOB domain-containing protein 31
TrEMBL	A0A2G3AHC8	1e-117	A0A2G3AHC8_CAPAN; LOB domain-containing protein 19
TrEMBL	A0A2G3DDY2	1e-117	A0A2G3DDY2_CAPCH; LOB domain-containing protein 31
STRING	Solyc01g091400.2.1	5e-80	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00210.1	6e-65	LOB domain-containing protein 31