 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | CA01g14430 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
| Family | FAR1 | ||||||||
| Protein Properties | Length: 135aa MW: 15771.9 Da PI: 8.8341 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 38.5 | 3.9e-12 | 61 | 130 | 1 | 73 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekd 73
kfY + A++ GFsv k++ ++s++n+ +++r+f Cske +r++++ k + + r etr gCk + +++k+
CA01g14430 61 KFYLDDAHRNGFSVHKNRITRSRKNKAMIDREFFCSKEEFRSKKSLK---SDKIRDETREGCKTMCIYQRKKK 130
6999**************************************99877...889999*******9998888764 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 5.9E-10 | 61 | 130 | IPR004330 | FAR1 DNA binding domain |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 135 aa Download sequence Send to blast |
MLDTLENFNL EEQNAEGTEG SLKEIESTVN AIVPFVLQSG DEESREPYVG MKFQSLDVEF 60 KFYLDDAHRN GFSVHKNRIT RSRKNKAMID REFFCSKEEF RSKKSLKSDK IRDETREGCK 120 TMCIYQRKKK KSRL* |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_019068484.1 | 1e-51 | protein FAR1-RELATED SEQUENCE 5 | ||||
| TrEMBL | A0A2G3AJK8 | 2e-93 | A0A2G3AJK8_CAPAN; Uncharacterized protein | ||||
| STRING | Solyc02g092170.1.1 | 9e-31 | (Solanum lycopersicum) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA645 | 8 | 60 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G59470.2 | 1e-12 | FAR1 family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|