PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g16080
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C3H
Protein Properties Length: 218aa    MW: 23617.8 Da    PI: 9.3706
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g16080genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.91.9e-092953226
                -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                kt+lC+ +     Ck+G++C+FaHg
  CA01g16080 29 KTRLCSKYNTAEGCKFGEKCRFAHG 53
                8***********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.9E-132558IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.18E-72557IPR000571Zinc finger, CCCH-type
SMARTSM003560.00262754IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.6662755IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-62953IPR000571Zinc finger, CCCH-type
SuperFamilySSF547913.07E-1591170IPR004088K Homology domain, type 1
SMARTSM003226.2E-1297167IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.108.6E-1698168IPR004088K Homology domain, type 1
PROSITE profilePS5008414.3298162IPR004088K Homology domain, type 1
CDDcd001051.99E-15100162No hitNo description
PfamPF000132.4E-11100164IPR004088K Homology domain, type 1
PROSITE profilePS501036.69186202IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MCTSYIHTFF HNLIAPPSFS DGASPPAVKT RLCSKYNTAE GCKFGEKCRF AHGDWELGRP  60
AAPLHEESHG MFQMHGRYGS RPETNPAGLG AAASFGSSAT AKISVDASLA GRIIGKGGVN  120
SKQICRVTGA KLSIRDHELD PNLRNIELEG TIDQLEQASR MVRELIQSVT TSVAPPKNTS  180
SSATSNYKTK ICENFAKSSC THFWRKVPLC TWSRRIA*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006356452.11e-122PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-61C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A0V0I0A91e-124A0A0V0I0A9_SOLCH; Putative zinc finger CCCH domain-containing protein 14-like
STRINGPGSC0003DMT4000618291e-123(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.15e-41C3H family protein