PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA01g17160

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

NAC

Protein Properties

Length: 230aa MW: 27130.8 Da PI: 9.6031

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA01g17160	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.3	1.3e-52	9	138	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 +ppGfrFhPt+eel+++yLkkk++ +k+++ evi+e+d++kvePw+L+++++ ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk + + + CA01g17160 9 VPPGFRFHPTEEELLHYYLKKKLSFHKFDM-EVIREIDLNKVEPWELQERCNIgstPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRN-S 105 69**************************.99**********964444222456*********************************9.8 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrle 129 +++g++ktLvfy+grap+g+ktdW+mheyrle CA01g17160 106 FKKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 138 899**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.02E-54	7	142	IPR003441	NAC domain
PROSITE profile	PS51005	52.365	9	229	IPR003441	NAC domain
Pfam	PF02365	2.5E-27	10	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009834	Biological Process	plant-type secondary cell wall biogenesis
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048829	Biological Process	root cap development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MASSSNGGVP PGFRFHPTEE ELLHYYLKKK LSFHKFDMEV IREIDLNKVE PWELQERCNI 60 GSTPQNEWYF FSHKDRKYPT GSRTNRATNA GFWKATGRDK CIRNSFKKIG MRKTLVFYRG 120 RAPHGQKTDW IMHEYRLEDA DENISVXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 180 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXQDT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-47	9	137	17	142	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-47	9	137	17	142	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-47	9	137	17	142	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-47	9	137	17	142	NO APICAL MERISTEM PROTEIN
3swm_A	9e-47	9	137	20	145	NAC domain-containing protein 19
3swm_B	9e-47	9	137	20	145	NAC domain-containing protein 19
3swm_C	9e-47	9	137	20	145	NAC domain-containing protein 19
3swm_D	9e-47	9	137	20	145	NAC domain-containing protein 19
3swp_A	9e-47	9	137	20	145	NAC domain-containing protein 19
3swp_B	9e-47	9	137	20	145	NAC domain-containing protein 19
3swp_C	9e-47	9	137	20	145	NAC domain-containing protein 19
3swp_D	9e-47	9	137	20	145	NAC domain-containing protein 19
3ulx_A	1e-46	9	137	15	140	Stress-induced transcription factor NAC1
4dul_A	9e-47	9	137	17	142	NAC domain-containing protein 19
4dul_B	9e-47	9	137	17	142	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269\|PubMed:20197506}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00431	DAP	Transfer from AT4G10350	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975518	9e-86	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016556495.1	1e-105	PREDICTED: protein BEARSKIN2
Swissprot	Q9SV87	1e-95	BRN2_ARATH; Protein BEARSKIN2
TrEMBL	A0A2G2V939	1e-104	A0A2G2V939_CAPBA; Protein BEARSKIN2
TrEMBL	A0A2G3AIX3	1e-104	A0A2G3AIX3_CAPAN; Protein BEARSKIN2
TrEMBL	A0A2G3DGI5	1e-104	A0A2G3DGI5_CAPCH; Protein BEARSKIN2
STRING	Solyc06g063430.1.1	1e-102	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA134	24	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G10350.1	1e-85	NAC domain containing protein 70

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Kamiya M, et al. Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis. Development, 2016. 143(21): p. 4063-4072 [PMID:27803060]