PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA01g17270

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LBD

Protein Properties

Length: 139aa MW: 15843.2 Da PI: 8.4806

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA01g17270	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	121	6.4e-38	5	104	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk lrr+C++dC++ pyfp ++p++f +vhk++Gasnv k+l++++e++r d+++sl+yeA +r++ Pv+G++g+i+ l+q++++ k ela++++ CA01g17270 5 RCAACKQLRRRCPSDCIFLPYFPPNNPQRFSFVHKIYGASNVGKMLQQVQEHQRADVANSLYYEAYCRIKSPVHGCLGIISILRQEIDHFKCELAKIQA 103 6**********************************************************************************************9998 PP DUF260 100 e 100 e CA01g17270 104 E 104 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.188	4	105	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-37	5	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 139 aa Download sequence Send to blast
MSSRRCAACK QLRRRCPSDC IFLPYFPPNN PQRFSFVHKI YGASNVGKML QQVQEHQRAD 60 VANSLYYEAY CRIKSPVHGC LGIISILRQE IDHFKCELAK IQAELSLVKA QAQIEAQGQV 120 ESDVYHPSFD ISSTPWFY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-34	6	105	12	111	LOB family transfactor Ramosa2.1
5ly0_B	2e-34	6	105	12	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	1e-49	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006356568.1	3e-77	PREDICTED: LOB domain-containing protein 24-like
Swissprot	P59468	4e-44	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	A0A2G3AIY3	9e-99	A0A2G3AIY3_CAPAN; LOB domain-containing protein 23
STRING	Solyc06g064540.1.1	7e-73	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5277	20	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	2e-46	LOB domain-containing protein 24