PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g18890
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRF
Protein Properties Length: 416aa    MW: 46006.3 Da    PI: 8.5824
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g18890genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC72.54.8e-23122165145
         WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                 d+epgrCrRtDGKkWRC+r+v++g+k+CE H+hrg  rsrk++e+
  CA01g18890 122 DPEPGRCRRTDGKKWRCRRDVIPGQKYCEQHMHRG-RRSRKHVEA 165
                 79*********************************.799999987 PP
2WRC62.18.5e-20309347240
         WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsr 40 
                 +e+ rCrR+DGKkWRCsr+v++ +k+CE H+hrg +r++
  CA01g18890 309 TEQERCRRSDGKKWRCSRNVVPHQKYCEIHMHRGAKRKS 347
                 6899******************************99986 PP
3QLQ42.32.3e-155893136
         QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                s FT aQ+ +L  Q+ ++KyL++++PvP +L + i+
  CA01g18890 58 SVFTEAQFRELQLQAVIFKYLVSGLPVPFHLFFTIW 93
                67*****************************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.2E-65894IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166616.1435994IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.5E-106093IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166723.307122167IPR014977WRC domain
PfamPF088791.6E-18123161IPR014977WRC domain
PROSITE profilePS5166721.082308352IPR014977WRC domain
PfamPF088796.5E-17310346IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MQLHQFSVTT LFPSGKGKED EIKEEQVSPP PCIELSLGNG SSSHVVEEEE VKDGKAKSVF  60
TEAQFRELQL QAVIFKYLVS GLPVPFHLFF TIWSSVSSSL GDGGIYKLYP TLGRFDYTSM  120
MDPEPGRCRR TDGKKWRCRR DVIPGQKYCE QHMHRGRRSR KHVEASEYVK KSDDASVASL  180
RAKLYASSDD LGSKCAPASS KTSCLSSSRN NQNISIEDSS TKPRFINSSN SSDKKDNLMT  240
CNRKDNASCP RTPSFIAGDN ADSKNIDFNR ISPSTTNQKQ NCGDARNDGA LLPIYGVLAK  300
SDLQHTTETE QERCRRSDGK KWRCSRNVVP HQKYCEIHMH RGAKRKSVAP DSVVVPPSKP  360
SFCPPENDAT GRNLNTSLSI YTIPGPQNTT DGDSNSNSTS DATTITDEIP AFVSR*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2179151e-153AC217915.1 Solanum lycopersicum chromosome 1 clone C01SLm0026F20, complete sequence.
GenBankHG9755131e-153HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006339771.10.0PREDICTED: growth-regulating factor 9
RefseqXP_016575585.10.0PREDICTED: growth-regulating factor 9
TrEMBLA0A2G3AGX20.0A0A2G3AGX2_CAPAN; Growth-regulating factor 10
STRINGPGSC0003DMT4000332460.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77981922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45480.16e-34growth-regulating factor 9