PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA01g19610

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

SRS

Protein Properties

Length: 224aa MW: 24818.5 Da PI: 8.3979

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA01g19610	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	189.1	1.6e-58	13	154	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkele 101 s +++CqdCGnqakkdC+++RCRtCCksrg++C+thvkstWvp++ rr r++ ++++ +++++ +a ++ kr s+ s++ + ++ e CA01g19610 13 SSSSRCQDCGNQAKKDCTYMRCRTCCKSRGYHCETHVKSTWVPVSTRRPRHHLHHSTIQQQQQ-LIQAGPNPKRYR-----SNESHQVIGGGD----QE 101 56789******************************************97777766555443.433333333332.....233333344443....35 PP DUF702 102 tsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 + ++P evss+avfrc+rvss+d++ +++aYqt+v+i+Gh+fkGiLydqG+++ CA01g19610 102 AGDFPVEVSSAAVFRCIRVSSIDNAVDQYAYQTSVKIAGHIFKGILYDQGPDD 154 788**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.3E-60	15	153	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.4E-27	18	59	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.0E-26	105	152	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MMRRSEEEGI SSSSSSRCQD CGNQAKKDCT YMRCRTCCKS RGYHCETHVK STWVPVSTRR 60 PRHHLHHSTI QQQQQLIQAG PNPKRYRSNE SHQVIGGGDQ EAGDFPVEVS SAAVFRCIRV 120 SSIDNAVDQY AYQTSVKIAG HIFKGILYDQ GPDDHESPRY SNINTNNMAG ESSSTGFQLQ 180 QSPNLPITTA TTSPHPPAST YPNLLFSALN MPGTQFFQYP KSS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:12361963, ECO:0000269\|PubMed:16740145, ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18811619, ECO:0000269\|PubMed:20154152, ECO:0000269\|PubMed:22318676}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269\|PubMed:21976484}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016582417.1	1e-169	PREDICTED: protein SHI RELATED SEQUENCE 3-like
Swissprot	Q9SD40	6e-51	SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBL	A0A1U8HG71	1e-167	A0A1U8HG71_CAPAN; Protein SHI RELATED SEQUENCE 4
TrEMBL	A0A2G2XNM3	1e-167	A0A2G2XNM3_CAPBA; Protein SHI RELATED SEQUENCE 4
TrEMBL	A0A2G3AGZ9	1e-167	A0A2G3AGZ9_CAPAN; protein SHI RELATED SEQUENCE 3-like
TrEMBL	A0A2G3BW45	1e-167	A0A2G3BW45_CAPCH; Protein SHI RELATED SEQUENCE 4
STRING	Solyc01g110140.2.1	3e-92	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4156	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	6e-47	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]