PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA01g20180

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C3H

Protein Properties

Length: 733aa MW: 79011.3 Da PI: 6.4477

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA01g20180	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.5	4.1e-07	309	329	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C++Gd C +aHg CA01g20180 309 PCPEFRK-GACRRGDMCEYAHG 329 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF48403	4.97E-16	36	163	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	6.3E-10	71	153	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.56E-14	83	162	No hit	No description
Gene3D	G3DSA:1.25.40.20	8.4E-17	83	163	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.592	84	192	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.0021	84	114	IPR002110	Ankyrin repeat
PRINTS	PR01415	3.4E-5	85	100	IPR002110	Ankyrin repeat
SMART	SM00248	6.2E-4	119	151	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.514	119	154	IPR002110	Ankyrin repeat
PRINTS	PR01415	3.4E-5	138	152	IPR002110	Ankyrin repeat
SMART	SM00356	9.5E-6	304	330	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.981	309	331	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.2E-4	309	329	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.7E-4	337	367	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	68	339	362	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 733 aa Download sequence Send to blast
MCTGPERPNS SASTNQSVTD STSSMKGMTK LTVETEDSFS SLLELAANND LEGFKRSVEL 60 DASAIDEVGL WLVRKKGAKQ IVNEERTPLM VAATYGSLDV LKLIISNPVV DINRACGPNK 120 CTALHCATSG GSVNAVDAVK LLLSAGADPN VEDANGQRPA DVIVVPPKLL GARASLEELL 180 LNSSSDGSIG DCKLRVSVAT SNASSPILSS SPENGSPCSP GDSLSSPLAL KFDDIPANSA 240 PEKKEYPIDP SLPDIKNSIY STDEFRMFSF KVRPCSRAYS HDWTECPFVH PGENARRRDP 300 RKYHYSCVPC PEFRKGACRR GDMCEYAHGV FECWLHPAQY RTRLCKDGTS CARRVCFFAH 360 TTEELRPLYV STGSAVPSPR SAASAASVMD MAAALNLFPG SPSAHTMMSP SAFNQPMSPT 420 ANGMSHSSGP WPQPNVPTLH LPGSNLQSSR LRSSLSARDI PPDDFNMLQD FDAQQLVLND 480 MACYSQPRPN SASLNRSGRS KTLTPSNLDE LFSAEMNSSP RYSDQAPASG VFSPSHKSAY 540 FNQFQQQQNM LSPINTNVFS PKNIEHPLLQ ASFGVSSPGR MSPRSMEPIS PMSARLSAFA 600 QREKQQQQLR SLSSRDLGSN NASIVGSPVG NSWSNWGSPS GKVDWSVNGS GLGNLRRSSS 660 FEQLNNGEEP DLSWVQSLVK ESPTEMKEKQ AAPNSSAAPS SESLKNSSQI DSVDHSVLGA 720 WLEQMQLDQL VA*

Sequence ? help Back to Top

Protein Sequence Length: 733 aa Download sequence Send to blast

MCTGPERPNS SASTNQSVTD STSSMKGMTK LTVETEDSFS SLLELAANND LEGFKRSVEL  60
DASAIDEVGL WLVRKKGAKQ IVNEERTPLM VAATYGSLDV LKLIISNPVV DINRACGPNK  120
CTALHCATSG GSVNAVDAVK LLLSAGADPN VEDANGQRPA DVIVVPPKLL GARASLEELL  180
LNSSSDGSIG DCKLRVSVAT SNASSPILSS SPENGSPCSP GDSLSSPLAL KFDDIPANSA  240
PEKKEYPIDP SLPDIKNSIY STDEFRMFSF KVRPCSRAYS HDWTECPFVH PGENARRRDP  300
RKYHYSCVPC PEFRKGACRR GDMCEYAHGV FECWLHPAQY RTRLCKDGTS CARRVCFFAH  360
TTEELRPLYV STGSAVPSPR SAASAASVMD MAAALNLFPG SPSAHTMMSP SAFNQPMSPT  420
ANGMSHSSGP WPQPNVPTLH LPGSNLQSSR LRSSLSARDI PPDDFNMLQD FDAQQLVLND  480
MACYSQPRPN SASLNRSGRS KTLTPSNLDE LFSAEMNSSP RYSDQAPASG VFSPSHKSAY  540
FNQFQQQQNM LSPINTNVFS PKNIEHPLLQ ASFGVSSPGR MSPRSMEPIS PMSARLSAFA  600
QREKQQQQLR SLSSRDLGSN NASIVGSPVG NSWSNWGSPS GKVDWSVNGS GLGNLRRSSS  660
FEQLNNGEEP DLSWVQSLVK ESPTEMKEKQ AAPNSSAAPS SESLKNSSQI DSVDHSVLGA  720
WLEQMQLDQL VA*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	0.0	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016538093.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30-like
Swissprot	P93755	0.0	C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A1U8DSV5	0.0	A0A1U8DSV5_CAPAN; Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A2G3AK41	0.0	A0A2G3AK41_CAPAN; zinc finger CCCH domain-containing protein 30-like
STRING	XP_009799603.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA883	24	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	CCCH-type zinc finger protein with ARM repeat domain

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He L, et al. Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene. Plant Physiol., 2016. 171(3): p. 1675-85 [PMID:27208260]