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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | CA01g21310 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 189aa MW: 21875.1 Da PI: 10.1324 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 37.9 | 6e-12 | 33 | 88 | 1 | 58 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraet 58
kfY +YA++ Fs+r++++ +s++++ i+ ++fvCsk+g ++++k + + +++ + +
CA01g21310 33 KFYLDYAHRSDFSIRRDRMIRSRKDKLIIGQEFVCSKQGLQSKKKLE--SINHNMKLE 88
6*****************************************99988..333333333 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 3.4E-9 | 33 | 86 | IPR004330 | FAR1 DNA binding domain |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 189 aa Download sequence Send to blast |
MDETGQIVSY IDVENSQDPY IGKEFQSRED SFKFYLDYAH RSDFSIRRDR MIRSRKDKLI 60 IGQEFVCSKQ GLQSKKKLES INHNMKLEKD AKYCYIYQRK KKVNGLFVGL SLSTIMSLHL 120 QTVKNSCEQR KKSETQKTLI DLLDNSGVRP SKIASILITQ AGGVDQLNLI GQDIQNYLRT 180 RRQKDLKK* |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_015167012.1 | 1e-60 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
| TrEMBL | A0A2G3AKS2 | 1e-134 | A0A2G3AKS2_CAPAN; Uncharacterized protein | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA645 | 8 | 60 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G38180.1 | 7e-16 | FAR1-related sequence 5 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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