PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g22590
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MIKC_MADS
Protein Properties Length: 235aa    MW: 27041.8 Da    PI: 9.7942
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g22590genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.64.5e-30959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krien++nrqvtf+kRrng+lKKA+ELSvLC+ae+a+i+fs++g++yeys+
  CA01g22590  9 KRIENNTNRQVTFCKRRNGLLKKAYELSVLCEAEIALIVFSTRGRVYEYSN 59
                79***********************************************95 PP
2K-box102.94.1e-34801738100
       K-box   8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                   ++e +a+ +qqe++kL+++i+++q+++Rhl+Ge+L+sL+++eL+qLe++Le++l++iRskK+e++l+++e+lqk+e +l++en+ Lr+k++e
  CA01g22590  80 CtTQELNAQFYQQESKKLRQQIQMMQNSNRHLVGEGLGSLNVRELKQLENRLERGLSRIRSKKHEMILAETENLQKREIQLEQENTFLRSKIAE 173
                 2478899************************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.2E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.179161IPR002100Transcription factor, MADS-box
CDDcd002654.15E-42278No hitNo description
SuperFamilySSF554555.36E-32279IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.6E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-313859IPR002100Transcription factor, MADS-box
PfamPF014863.1E-2683171IPR002487Transcription factor, K-box
PROSITE profilePS5129716.29387177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:0090376Biological Processseed trichome differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MGRGKIEIKR IENNTNRQVT FCKRRNGLLK KAYELSVLCE AEIALIVFST RGRVYEYSNN  60
NIKATIERYK KATAEHSNAC TTQELNAQFY QQESKKLRQQ IQMMQNSNRH LVGEGLGSLN  120
VRELKQLENR LERGLSRIRS KKHEMILAET ENLQKREIQL EQENTFLRSK IAENERLQEL  180
SMMPAGGGQE YSAIQHYLAG NMLQLNMMEG QAGVSTSYDP LSPHHHDKKS LHLH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P5e-21185185Myocyte-specific enhancer factor 2B
1tqe_Q5e-21185185Myocyte-specific enhancer factor 2B
1tqe_R5e-21185185Myocyte-specific enhancer factor 2B
1tqe_S5e-21185185Myocyte-specific enhancer factor 2B
6c9l_A5e-21185185Myocyte-specific enhancer factor 2B
6c9l_B5e-21185185Myocyte-specific enhancer factor 2B
6c9l_C5e-21185185Myocyte-specific enhancer factor 2B
6c9l_D5e-21185185Myocyte-specific enhancer factor 2B
6c9l_E5e-21185185Myocyte-specific enhancer factor 2B
6c9l_F5e-21185185Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in seed development (PubMed:21447172, Ref.1, PubMed:29853599). Plays a role in seed morphogenesis by promoting the correct development of endotesta cell layer, which directs the further development of the seed coat, the endosperm, and consequently the embryo (Ref.1, PubMed:29853599). {ECO:0000269|PubMed:21447172, ECO:0000269|PubMed:29853599, ECO:0000269|Ref.1}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016582207.11e-172PREDICTED: agamous-like MADS-box protein AGL11 isoform X1
SwissprotF6I4571e-109AG11C_VITVI; Agamous-like MADS-box protein AGL11
TrEMBLA0A1U8HFL21e-171A0A1U8HFL2_CAPAN; Floral homeotic protein AGAMOUS
TrEMBLA0A2G3AJX11e-171A0A2G3AJX1_CAPAN; agamous-like MADS-box protein AGL11 isoform X1
STRINGPGSC0003DMT4000132481e-153(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.11e-99MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Mejía N, et al.
    Molecular, genetic and transcriptional evidence for a role of VvAGL11 in stenospermocarpic seedlessness in grapevine.
    BMC Plant Biol., 2011. 11: p. 57
    [PMID:21447172]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]
  5. Malabarba J, et al.
    The MADS-box gene Agamous-like 11 is essential for seed morphogenesis in grapevine.
    J. Exp. Bot., 2017. 68(7): p. 1493-1506
    [PMID:28369525]
  6. Royo C, et al.
    The Major Origin of Seedless Grapes Is Associated with a Missense Mutation in the MADS-Box Gene VviAGL11.
    Plant Physiol., 2018. 177(3): p. 1234-1253
    [PMID:29853599]