PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA01g23300

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

WRKY

Protein Properties

Length: 228aa MW: 25256.1 Da PI: 4.8458

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA01g23300	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95	5.1e-30	45	103	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC++kk+ver+++d ++++itY+++Hnh+ CA01g23300 45 SDCWSWRKYGQKPIKGSPYPRGYYRCSSSkGCSAKKQVERCSKDASLFIITYTSSHNHP 103 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.6E-31	36	105	IPR003657	WRKY domain
SuperFamily	SSF118290	8.5E-26	41	105	IPR003657	WRKY domain
SMART	SM00774	1.0E-34	44	104	IPR003657	WRKY domain
PROSITE profile	PS50811	30.423	45	105	IPR003657	WRKY domain
Pfam	PF03106	5.0E-25	46	103	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MKRGLFSVFS DSSECPDIRK IGQKVVFKVQ MEGKAIKQKN EGPPSDCWSW RKYGQKPIKG 60 SPYPRGYYRC SSSKGCSAKK QVERCSKDAS LFIITYTSSH NHPGPNLPNN KDTVTHDSTA 120 TLPQQDREPT VDKDVPLKDN GDSTTTTTTA TSISQGIPEE NLFTDSFLGT ISYDDFLPLS 180 YPQLMEFPKS ELSEENDFYD ELGELQLPPS STSFAGIFEE AILVDPS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	8e-20	46	105	18	79	Disease resistance protein RRS1
5w3x_D	8e-20	46	105	18	79	Disease resistance protein RRS1
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Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	9e-86	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018634143.1	1e-114	PREDICTED: probable WRKY transcription factor 35 isoform X2
TrEMBL	A0A2G3AK14	1e-167	A0A2G3AK14_CAPAN; Putative WRKY transcription factor 69
STRING	PGSC0003DMT400023272	1e-112	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11281	20	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29280.1	8e-34	WRKY DNA-binding protein 65