PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA01g25810

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB_related

Protein Properties

Length: 1142aa MW: 127877 Da PI: 8.1889

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA01g25810	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.8	5.8e-09	48	83	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++e+ ++++a +++G++ Wk++a+t+ Rt++++ CA01g25810 48 QWSEEDLTRFYQAYRKYGKD-WKKVASTVK-FRTAEMV 83 6***************99.****9.*9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0073	45	93	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.32E-9	47	93	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.0E-4	48	84	IPR009057	Homeodomain-like
Pfam	PF00249	7.7E-7	48	83	IPR001005	SANT/Myb domain
CDD	cd00167	5.01E-5	49	83	No hit	No description
SMART	SM01135	2.0E-55	635	736	IPR033471	DIRP domain
Pfam	PF06584	1.1E-31	635	735	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1142 aa Download sequence Send to blast
MAPAKKSKSI NKRLSPTTEI SPSKDGNGDN GKKSLQRKRK LSDMLGPQWS EEDLTRFYQA 60 YRKYGKDWKK VASTVKFRTA EMVEALYTMN RAYLSLPEGT ASVAGLIAMM TDHYCNLAAS 120 DSEQESNEDA GTSRKPQKRA WGKVHPNISK TSEMTSSALA ASHGCLTLLK KKRSGGARPR 180 AVGKRTPRFP VSFSYENPKG EKYFSPSGQS LKVQPHDTDD DVKIALVLTE ASQRGGSPQF 240 SKTPSRWTDG AMFSPIGTAE RKRVKVDMGN AKLLSNEVDE EEGSMEADTG ELMRYKNDFE 300 EAETVGRTTQ KQKRPYGKKL EVDDSGENHF DDIKEACSGT EEGQRLGAAR GKLEMEATDE 360 KNARASLQGP RKRSKKVLFG RDESSSFDAL QTLADLSLMM PAAENEDESM MQVKDEIDDH 420 FDESGSLEAI PAHKQRDKQG SAGVKSRWSQ SLSKFEVTSS KTSKHGKVTS SDVNAVPETK 480 QARRAQKAMS SKARKAEVHV DYDVTESQEA AVKDASKKAT SKGKRSYQCV LPKLIKDQEH 540 SSCADPRTER SDSAQSTAQI PVENQVNLPT KVRSRRKMDL EKPQKQKDLK IPDKSLDDPS 600 ASFTALRDKA FSLKKKISSC LSNHQVRRWC TYEWFYSAID YPWFAKREFV EYLYHVGLGH 660 VPRLTRVEWG VIRSSLGKPR RFSEQFLNEE KEKLNQYRES VRSHYTELRE GTREGLPTDL 720 ARPLSVGQLV IAIHPKTREI HDGNVLTVDH SRCRVQFDRP ELGVEFVMDI DCMPLNPFEN 780 MPTLLTRHAD AVDKFFESFN ELKMNARANE FMKFPAGDST ENGDVSSHFS PPSHPVSNLL 840 KQTKVASAEA DMQSKSGVME TTVYQQIAYS KPSTVAQIQA KEADVQALAE LTRALDKKDA 900 VVLELSLMND DVLENQKSDD CSLKDSEPFK KQYAAVLIQL NEVNEQVSSA LYRLRQRNTY 960 HGSIPLAWQR PVPNFADPSI LSTFDRCTSQ PQESGFLVNE IIESSKIKSW TMVDAAVQAM 1020 LSYTGRDNTT EKIEEAIDYV NDRIPLDDSC MPIPPDLKSK NVSDRRNEAE IPSELITKCV 1080 ATLLMIQKCT ERQFPPADMA KVLDSAVASL QPCCSQNFPV YAEIQKCMGI IRNQIMALIP 1140 T*

Sequence ? help Back to Top

Protein Sequence Length: 1142 aa Download sequence Send to blast

MAPAKKSKSI NKRLSPTTEI SPSKDGNGDN GKKSLQRKRK LSDMLGPQWS EEDLTRFYQA  60
YRKYGKDWKK VASTVKFRTA EMVEALYTMN RAYLSLPEGT ASVAGLIAMM TDHYCNLAAS  120
DSEQESNEDA GTSRKPQKRA WGKVHPNISK TSEMTSSALA ASHGCLTLLK KKRSGGARPR  180
AVGKRTPRFP VSFSYENPKG EKYFSPSGQS LKVQPHDTDD DVKIALVLTE ASQRGGSPQF  240
SKTPSRWTDG AMFSPIGTAE RKRVKVDMGN AKLLSNEVDE EEGSMEADTG ELMRYKNDFE  300
EAETVGRTTQ KQKRPYGKKL EVDDSGENHF DDIKEACSGT EEGQRLGAAR GKLEMEATDE  360
KNARASLQGP RKRSKKVLFG RDESSSFDAL QTLADLSLMM PAAENEDESM MQVKDEIDDH  420
FDESGSLEAI PAHKQRDKQG SAGVKSRWSQ SLSKFEVTSS KTSKHGKVTS SDVNAVPETK  480
QARRAQKAMS SKARKAEVHV DYDVTESQEA AVKDASKKAT SKGKRSYQCV LPKLIKDQEH  540
SSCADPRTER SDSAQSTAQI PVENQVNLPT KVRSRRKMDL EKPQKQKDLK IPDKSLDDPS  600
ASFTALRDKA FSLKKKISSC LSNHQVRRWC TYEWFYSAID YPWFAKREFV EYLYHVGLGH  660
VPRLTRVEWG VIRSSLGKPR RFSEQFLNEE KEKLNQYRES VRSHYTELRE GTREGLPTDL  720
ARPLSVGQLV IAIHPKTREI HDGNVLTVDH SRCRVQFDRP ELGVEFVMDI DCMPLNPFEN  780
MPTLLTRHAD AVDKFFESFN ELKMNARANE FMKFPAGDST ENGDVSSHFS PPSHPVSNLL  840
KQTKVASAEA DMQSKSGVME TTVYQQIAYS KPSTVAQIQA KEADVQALAE LTRALDKKDA  900
VVLELSLMND DVLENQKSDD CSLKDSEPFK KQYAAVLIQL NEVNEQVSSA LYRLRQRNTY  960
HGSIPLAWQR PVPNFADPSI LSTFDRCTSQ PQESGFLVNE IIESSKIKSW TMVDAAVQAM  1020
LSYTGRDNTT EKIEEAIDYV NDRIPLDDSC MPIPPDLKSK NVSDRRNEAE IPSELITKCV  1080
ATLLMIQKCT ERQFPPADMA KVLDSAVASL QPCCSQNFPV YAEIQKCMGI IRNQIMALIP  1140
T*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC243718	1e-131	AC243718.3 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-7h19 map 1, complete sequence.
GenBank	HG975440	1e-131	HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBank	HG975513	1e-131	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016542039.1	0.0	PREDICTED: protein ALWAYS EARLY 3-like isoform X1
Swissprot	Q6A332	0.0	ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBL	A0A1U8EDU8	0.0	A0A1U8EDU8_CAPAN; Uncharacterized protein
TrEMBL	A0A2G3ALG0	0.0	A0A2G3ALG0_CAPAN; protein ALWAYS EARLY 3-like isoform X1
STRING	Solyc01g067560.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3312	23	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]