PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g26680
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 160aa    MW: 17994.8 Da    PI: 7.1113
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g26680genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS27.24.6e-092512577
        GRAS 25 arlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknssee 77
                ++l+  +s  g+pmqRl  y++e+L arla+ +s++ykal+++e ++   +e 
  CA01g26680  2 SELRRVVSVCGSPMQRLGVYMLEGLVARLASLGSSIYKALKCKELTS---VEL 51
                789999*************************************9984...333 PP
2GRAS99.74.4e-3161159183281
        GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                 + +++d+e+++L+v+pgE laVn++l lh+++des+ ++++rd++L++vkslsPk+v++veqe+++n+ +F+  fle+l+yy ++f+s+++ lpr+++e
  CA01g26680  61 SVHTSDVEIKDLNVRPGEPLAVNFALVLHHMHDESAGTQNHRDRLLRMVKSLSPKIVTLVEQESNTNTVQFFPYFLETLNYYLSVFESIDVALPRDHKE 159
                 447899*****************************************************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098517.2651159IPR005202Transcription factor GRAS
PfamPF035141.4E-6252IPR005202Transcription factor GRAS
PfamPF035141.5E-2861159IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MSELRRVVSV CGSPMQRLGV YMLEGLVARL ASLGSSIYKA LKCKELTSVE LFSTCTCFMK  60
SVHTSDVEIK DLNVRPGEPL AVNFALVLHH MHDESAGTQN HRDRLLRMVK SLSPKIVTLV  120
EQESNTNTVQ FFPYFLETLN YYLSVFESID VALPRDHKE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-1558159183279GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754469e-85HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016581393.12e-55PREDICTED: scarecrow-like transcription factor PAT1
SwissprotQ9LDL72e-44PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A2G3ALV21e-114A0A2G3ALV2_CAPAN; Scarecrow-like protein 21
STRINGXP_009626207.13e-52(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.26e-47GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]