PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g26690
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 90aa    MW: 10665.3 Da    PI: 7.2494
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g26690genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS55.31.3e-17269296364
        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364
                 n++  e+a+r+erhe le+Wr+r++++ Fkp+pls+++++++k+ll++++ + y+++ ++g l++gW++
  CA01g26690   2 NILKYEEAKRVERHELLERWRSRFSMVNFKPYPLSSSINATIKTLLENYY-RSYTLDMRNGVLYFGWMN 69 
                 8999**********************************************.66**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098511.915160IPR005202Transcription factor GRAS
PfamPF035144.4E-15269IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MNILKYEEAK RVERHELLER WRSRFSMVNF KPYPLSSSIN ATIKTLLENY YRSYTLDMRN  60
GVLYFGWMNG DESQFGCFLC LEIVILPEV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016581393.14e-33PREDICTED: scarecrow-like transcription factor PAT1
SwissprotQ9LDL79e-23PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A2G3ALX81e-59A0A2G3ALX8_CAPAN; Uncharacterized protein
TrEMBLA0A2G3DIS94e-59A0A2G3DIS9_CAPCH; Scarecrow-like transcription factor PAT1
STRINGPGSC0003DMT4000571113e-31(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.24e-25GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]