PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g27050
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 186aa    MW: 20321.4 Da    PI: 6.7959
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g27050genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF26.86.5e-091222142
                HHHHHHHHHHHT-EEEEEEE-T CS
      SRF-TF 21 lKKAeELSvLCdaevaviifss 42
                +KKA+EL +LC++e+a +i+s+
  CA01g27050  1 MKKAHELNTLCGVEIAAVIYSP 22
                8*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500668.76121IPR002100Transcription factor, MADS-box
PfamPF003198.1E-8123IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.41E-9161IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MKKAHELNTL CGVEIAAVIY SPYSNGPVVF PHYEDTLNTF RKFKSLPTLV QSKSVVTREE  60
FTKVKEITNT NTKNEVLKEK VLPIDREGST SNASQAVVGP VVPAAPPQMV PTVDPSRVPH  120
RRAPIVAPPL PSTTMAYEVS ASVFPVMIPQ MDSSMYIPSV DLSLLMNDYQ KYSVDGFPQS  180
PALTE*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G3ALZ01e-131A0A2G3ALZ0_CAPAN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13291040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27810.16e-13M-type_MADS family protein