PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA01g27470

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Trihelix

Protein Properties

Length: 330aa MW: 37210.4 Da PI: 9.426

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA01g27470	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	59.4	9.2e-19	33	125	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegek....krtsessstcpyfdqle 86 +W+++e+ aLi+a+re++ +lrrg+l++++W+ev++ + ++++qC++k+e+l+kry+++ +++ r+ + s +++f++++ CA01g27470 33 CWSHDETIALIDAYREKWYSLRRGNLRANHWQEVADDVavrCPIDPPKTAVQCRHKMEKLRKRYRAEIQRAApyggARSHRYCSAWVHFKRMD 125 8***********************************7544455599***************9998875111133445556777888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.1E-20	32	127	No hit	No description
PROSITE profile	PS50090	6.365	34	93	IPR017877	Myb-like domain
SMART	SM00595	1.5E-9	41	132	IPR006578	MADF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MAAQDFSNVT PTRVLPSSDV TVAVASRRLP PPCWSHDETI ALIDAYREKW YSLRRGNLRA 60 NHWQEVADDV AVRCPIDPPK TAVQCRHKME KLRKRYRAEI QRAAPYGGAR SHRYCSAWVH 120 FKRMDMMERG PNAVSPPPSD DEGEEDVEDY RQNSVKLIGD LYGNNVNPGD RSSYPGVVSN 180 GGGGFRIRIP GFSGSHPGSA PPMAKPYGRF EDSGVENPNN FGSSKMYRDG FVKKPDLGKR 240 VVGEGMGEKR KGDPMEEMVD AIKVLGDVFV RTERMKMDMA RELERARMEM EMKRTEMILE 300 SQQRIVEAFA QAMSEKKHKK AKRMPTPEC*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016544457.1	0.0	PREDICTED: trihelix transcription factor ASIL2
TrEMBL	A0A1U8EB74	0.0	A0A1U8EB74_CAPAN; Uncharacterized protein
TrEMBL	A0A2G3AM50	0.0	A0A2G3AM50_CAPAN; trihelix transcription factor ASIL2
STRING	PGSC0003DMT400004269	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8028	23	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	6e-46	Trihelix family protein