PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g28300
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family B3
Protein Properties Length: 169aa    MW: 20133.6 Da    PI: 4.0222
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g28300genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.82.3e-142731899
                --HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3 18 lpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                +p  f+ ++ +g    +++ ++  + g++W vk+  ++++    l++GW++F+++++L+ gD+++F+++g+++f   v++f++
  CA01g28300  2 IPIGFL-KYlKGH--DHIEHVVLKRAGNKWLVKM--NGRR----LEDGWEKFAEEHDLRLGDMLIFRHEGDMDF--DVSIFDS 73
                677777.453444..4567899999*********..8888....******************************..9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.535174IPR003340B3 DNA binding domain
SuperFamilySSF1019369.61E-16276IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.3E-16275IPR015300DNA-binding pseudobarrel domain
CDDcd100177.22E-12272No hitNo description
PfamPF023621.9E-10273IPR003340B3 DNA binding domain
SMARTSM010195.0E-5674IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
KIPIGFLKYL KGHDHIEHVV LKRAGNKWLV KMNGRRLEDG WEKFAEEHDL RLGDMLIFRH  60
EGDMDFDVSI FDSTHCDTEY AEYMQIQKEK EKEVEDENEN EDDEVVEDEN DYEDDDDGEE  120
EDENENENDD AEEERGDDEC EEAATHDRPF GRSHFEFTIR QYCLSRGFM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016557431.11e-116PREDICTED: B3 domain-containing protein REM17-like
TrEMBLA0A1U8FDW51e-114A0A1U8FDW5_CAPAN; B3 domain-containing protein REM17-like
STRINGXP_009801953.11e-49(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.11e-17B3 family protein