PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g28790
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 318aa    MW: 36052.5 Da    PI: 8.7141
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g28790genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.74.8e-161150342
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                ien ++r+v++ kR++g +KKA+EL +LC++e a+ii+s+
  CA01g28790 11 IENITKRKVSYKKRQKGFIKKAFELKTLCNVEMAIIIYSP 50
                9*************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006619.245149IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-14160IPR002100Transcription factor, MADS-box
CDDcd002665.92E-20284No hitNo description
SuperFamilySSF554551.7E-19291IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-10323IPR002100Transcription factor, MADS-box
PfamPF003192.8E-151150IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MGRNKVKLDI IENITKRKVS YKKRQKGFIK KAFELKTLCN VEMAIIIYSP YHIEPKLFPN  60
NDDAIETFTK FRELPEFVQS KNMVTQKKFT EEMKEKIEEK IRKIKKENRV KEFTNKMYEM  120
LNEKNSQFGM NRSELNDLCY VINENLKQVC GMIKKKADGE SSTPYSQQPT SGPMVTGMSI  180
SEGPRAPSLS HDGTSVLVVP MVDPPMIPSG INFERPRFPQ LVSNVTSIAM IPSETSSIVP  240
LAYPSQVPQP PINPSMSNPL LDASMPMNIN QNYSSGFPMS PSLSQMLDWN DDVITLLGDP  300
YFNNINFQDP SNNNNNF*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016582370.11e-77PREDICTED: uncharacterized protein LOC107879963
TrEMBLA0A2G3AI861e-159A0A2G3AI86_CAPAN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13291040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.33e-19M-type_MADS family protein