PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA01g29220

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Nin-like

Protein Properties

Length: 964aa MW: 107083 Da PI: 6.4503

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA01g29220	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.1	3.7e-28	567	618	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l+++Fs+++kdAAk++gvc+T+LKriCRqyGI+RWP+Rki+++ CA01g29220 567 AEKHVSLSVLQQHFSGSLKDAAKCIGVCPTTLKRICRQYGISRWPSRKISKV 618 5899*********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.552	557	638	IPR003035	RWP-RK domain
Pfam	PF02042	3.9E-24	571	618	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.05E-21	855	948	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.2E-23	860	943	No hit	No description
SMART	SM00666	2.1E-20	863	945	IPR000270	PB1 domain
PROSITE profile	PS51745	21.899	863	945	IPR000270	PB1 domain
CDD	cd06407	1.22E-30	864	944	No hit	No description
Pfam	PF00564	8.9E-17	864	944	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 964 aa Download sequence Send to blast
MENGIGFRAS PRSHQMEGIA SIDGGTCCSY VDDTFNSAME IMNLDTCASW CSSSPHGIQQ 60 MFASYPAFSP INPMSINYEP FEELNYYEQN TETFPCGREN FMFPQNHLVD KKQNYVTDSV 120 QNCIIPKSPC QSLAERMLKA LELFKKSSGG GILAQVWIPM KSGDQYILST YEQPFLLDQV 180 LSGYREVSRK FTFDLEMKPG SCPGLPGRVF TSRIPEWTSN ILYYKEAEYL RIQYAVDHEV 240 RGCIALPVLE EDGHDTPCCA VLELVTMKEM PNFDLEMSHV CQALQAVNLR STTPPRFSSK 300 SISKNQRAAL TEIKDVLRAV CHAHRLPLAL TWIPRSCREG GNDIIRAHAR GSIARSDEKR 360 VLHVENIACY VKDREMQGFL HACMGHDLEE GQGIVGKSLQ SNHPFFYLDV KEYHISEYPL 420 VHHARKFGLN AAVAIRLRST LTGDDDYVVE FFLPVDIEGS TEQQLLLDNL SRTMQRICRS 480 LRTLSDAELV GQEGEKCGLQ SESVLSLPPI DFSRRISQQS LLDNTLDLSK APIDVCDLER 540 AGIEANRSHK QTLSVSKRQT GKKRSAAEKH VSLSVLQQHF SGSLKDAAKC IGVCPTTLKR 600 ICRQYGISRW PSRKISKVNR SLVKIQTVLK SVQGIEGGLK FDRVTGGLVA ASSILQDFDS 660 RKSVVFPCKD VLIQNPESHL QDAVSMLQTS CIDNHNSLVK IEENLHVDGS QLAESNHLSP 720 SSFRVDDKPN SSVSGVCHGS KLAALVEGSS LPSKPEWTSP RNVSLVSFHT KEGWSSGLNK 780 GSLNLDTSGC HFISRCPDSM ANTKTEGSTE KDGDDGIMEH NKVCTLGMTD SSNTSDSTIN 840 GSSFSSRSSS ERKHTTVEHG GSQITVKATY KEDKIRFKFE PSSGCFQLYE EVAKRFKLQT 900 GTFQLQYLDD EEEWVMLVND ADLNECSEIL DILGTRNVKL LVHDVSCTVG SSGSSNCFLT 960 NDF*

Sequence ? help Back to Top

Protein Sequence Length: 964 aa Download sequence Send to blast

MENGIGFRAS PRSHQMEGIA SIDGGTCCSY VDDTFNSAME IMNLDTCASW CSSSPHGIQQ  60
MFASYPAFSP INPMSINYEP FEELNYYEQN TETFPCGREN FMFPQNHLVD KKQNYVTDSV  120
QNCIIPKSPC QSLAERMLKA LELFKKSSGG GILAQVWIPM KSGDQYILST YEQPFLLDQV  180
LSGYREVSRK FTFDLEMKPG SCPGLPGRVF TSRIPEWTSN ILYYKEAEYL RIQYAVDHEV  240
RGCIALPVLE EDGHDTPCCA VLELVTMKEM PNFDLEMSHV CQALQAVNLR STTPPRFSSK  300
SISKNQRAAL TEIKDVLRAV CHAHRLPLAL TWIPRSCREG GNDIIRAHAR GSIARSDEKR  360
VLHVENIACY VKDREMQGFL HACMGHDLEE GQGIVGKSLQ SNHPFFYLDV KEYHISEYPL  420
VHHARKFGLN AAVAIRLRST LTGDDDYVVE FFLPVDIEGS TEQQLLLDNL SRTMQRICRS  480
LRTLSDAELV GQEGEKCGLQ SESVLSLPPI DFSRRISQQS LLDNTLDLSK APIDVCDLER  540
AGIEANRSHK QTLSVSKRQT GKKRSAAEKH VSLSVLQQHF SGSLKDAAKC IGVCPTTLKR  600
ICRQYGISRW PSRKISKVNR SLVKIQTVLK SVQGIEGGLK FDRVTGGLVA ASSILQDFDS  660
RKSVVFPCKD VLIQNPESHL QDAVSMLQTS CIDNHNSLVK IEENLHVDGS QLAESNHLSP  720
SSFRVDDKPN SSVSGVCHGS KLAALVEGSS LPSKPEWTSP RNVSLVSFHT KEGWSSGLNK  780
GSLNLDTSGC HFISRCPDSM ANTKTEGSTE KDGDDGIMEH NKVCTLGMTD SSNTSDSTIN  840
GSSFSSRSSS ERKHTTVEHG GSQITVKATY KEDKIRFKFE PSSGCFQLYE EVAKRFKLQT  900
GTFQLQYLDD EEEWVMLVND ADLNECSEIL DILGTRNVKL LVHDVSCTVG SSGSSNCFLT  960
NDF*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975520	0.0	HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016547925.1	0.0	PREDICTED: protein NLP9-like
Refseq	XP_016547932.1	0.0	PREDICTED: protein NLP9-like
TrEMBL	A0A2G3AN37	0.0	A0A2G3AN37_CAPAN; Protein NLP2
STRING	PGSC0003DMT400015041	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3981	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein