PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA01g29700

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

WRKY

Protein Properties

Length: 306aa MW: 33078.3 Da PI: 10.3876

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA01g29700	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.4	2e-30	215	273	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+++WrKYGqK++kgs++pr+YYrC+s gCp++k+ver+++dp+++++tYe++H+h+ CA01g29700 215 ADEFTWRKYGQKPIKGSPYPRGYYRCSSLkGCPARKHVERATDDPRMLIVTYENDHEHH 273 69***********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	2.5E-11	167	212	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	2.6E-32	203	273	IPR003657	WRKY domain
PROSITE profile	PS50811	29.7	209	275	IPR003657	WRKY domain
SuperFamily	SSF118290	8.37E-26	210	273	IPR003657	WRKY domain
SMART	SM00774	1.5E-35	214	274	IPR003657	WRKY domain
Pfam	PF03106	4.3E-26	216	273	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MALDLFAIEQ TASAGLKSMD HLIQFVSSNP TAKPDCREIT EYTVSNFRNV ISMLNRPTGH 60 ARVRRGXXVK VAPPVVSSPV VAPPMVAAPV EKEKEKEKMF RSTPALTFDF TKRKVAVPAA 120 PSPAAGVGVV SKDVAMANST NSSSSSFVST ITAEGSVSNG RPPIAGKRCR DHDVSDEFSG 180 RTSSAGKCPC KKSKPKVKKV IRVPAISSKT SDIPADEFTW RKYGQKPIKG SPYPRGYYRC 240 SSLKGCPARK HVERATDDPR MLIVTYENDH EHHHNIQTAF SGAAIGSRDG SSGQRMMVFE 300 SMGQK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-21	202	272	2	71	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269\|PubMed:26433201}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269\|PubMed:11722756, ECO:0000269\|PubMed:26433201}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016555415.1	1e-173	PREDICTED: probable WRKY transcription factor 17
Swissprot	Q9SV15	3e-78	WRK11_ARATH; Probable WRKY transcription factor 11
TrEMBL	A0A2G3ANJ9	0.0	A0A2G3ANJ9_CAPAN; Putative WRKY transcription factor 7
STRING	Solyc08g006320.2.1	1e-103	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3145	22	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31550.2	8e-66	WRKY DNA-binding protein 11

Publications ? help Back to Top
Haas BJ, et al. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol., 2002. 3(6): p. RESEARCH0029 [PMID:12093376] Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821] Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ali MA,Wieczorek K,Kreil DP,Bohlmann H The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in Arabidopsis roots. PLoS ONE, 2014. 9(7): p. e102360 [PMID:25033038] Jiang CH, et al. Transcription factors WRKY70 and WRKY11 served as regulators in rhizobacterium Bacillus cereus AR156-induced systemic resistance to Pseudomonas syringae pv. tomato DC3000 in Arabidopsis. J. Exp. Bot., 2016. 67(1): p. 157-74 [PMID:26433201] Ali MA, et al. Transcription factors WRKY11 and WRKY17 are involved in abiotic stress responses in Arabidopsis. J. Plant Physiol., 2018. 226: p. 12-21 [PMID:29689430]