PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g29750
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family B3
Protein Properties Length: 171aa    MW: 19567.9 Da    PI: 9.0311
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g29750genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.84.1e-1821107494
                 E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
          B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                  +++ ++l++g l++p kfa+e+g+ ++ +  l+++de+ rsW++++    +  ++ +++ W++F+ an++k+gD ++F+++  s+ ++v 
  CA01g29750  21 CTVKQYYLTNGYLRIPSKFAKENGLTNK-ECGLIIRDERQRSWNLRM--YTSCHHVCIGGRWRKFCVANDIKVGDQIMFEVVT-SGVQPVW 107
                 5678999****************76643.346999************..9999999************************765.5555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.8E-1916110IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.51918112IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-1818110IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.8E-1219113IPR003340B3 DNA binding domain
PfamPF023624.7E-1621108IPR003340B3 DNA binding domain
CDDcd100172.35E-142697No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
KAFLHAEAAP HNPFGESQFV CTVKQYYLTN GYLRIPSKFA KENGLTNKEC GLIIRDERQR  60
SWNLRMYTSC HHVCIGGRWR KFCVANDIKV GDQIMFEVVT SGVQPVWKFH GKVSHLKQLL  120
LFSRFFIVIV EELIVTVGKE HMFVVLMIDN YGPSSLLVIF CMLYHGNQAP *
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0092833e-91AP009283.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0216M19, complete sequence.
GenBankHG9755203e-91HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016549299.12e-69PREDICTED: putative B3 domain-containing protein REM15 isoform X3
RefseqXP_016549320.16e-70PREDICTED: B3 domain-containing protein REM14-like isoform X7
TrEMBLA0A1U8F1041e-68A0A1U8F104_CAPAN; B3 domain-containing protein REM14-like isoform X7
TrEMBLA0A2G3ANJ43e-68A0A2G3ANJ4_CAPAN; Uncharacterized protein
STRINGXP_009612446.16e-55(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31630.12e-14B3 family protein