PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g29760
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family B3
Protein Properties Length: 212aa    MW: 24470.8 Da    PI: 6.8768
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g29760genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.52.4e-134751898
                --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                +p  f+++ +g+  e+    +  ++g++  vkl  ++++    l++GW++F+++++L+ gD +vF++dg++ef   v++f+
  CA01g29760  4 IPVGFLKHLEGPG-EKERAAVLKRDGKKCLVKL--NGQK----LEEGWEQFAEEHDLQLGDLLVFRHDGNMEF--DVSIFN 75
                9999**6666554.4457888999*********..8888....*************************99999..888875 PP
2B354.22.7e-17122206593
                 -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 +++ ++l++g l++p+kfa+++g+++ ++  l+++de+ rsW++++    + +++++++ W eF  an++k+gD ++F+++++ ++++v
  CA01g29760 122 TIKQYSLRNGYLRIPNKFAKANGLIN-KDCGLIIRDERQRSWNLRI--YTSCSQVYMGGRWGEFRAANDIKAGDQIMFEVVSN-GEQPV 206
                 578999****************7774.4557***************..88888999***********************8875.33344 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.434177IPR003340B3 DNA binding domain
SMARTSM010194.6E-5177IPR003340B3 DNA binding domain
SuperFamilySSF1019365.69E-14383IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.1E-15376IPR015300DNA-binding pseudobarrel domain
PfamPF023628.6E-10474IPR003340B3 DNA binding domain
CDDcd100176.34E-14475No hitNo description
Gene3DG3DSA:2.40.330.109.4E-18116209IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.7E-9118212IPR003340B3 DNA binding domain
PROSITE profilePS5086311.73118212IPR003340B3 DNA binding domain
SuperFamilySSF1019362.94E-18118209IPR015300DNA-binding pseudobarrel domain
PfamPF023621.6E-15121206IPR003340B3 DNA binding domain
CDDcd100172.19E-14128197No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MQKIPVGFLK HLEGPGEKER AAVLKRDGKK CLVKLNGQKL EEGWEQFAEE HDLQLGDLLV  60
FRHDGNMEFD VSIFNLSHYD REYAEYLLEE EEGHTIEATS KIFESKEAAT HNPIGRSQFI  120
CTIKQYSLRN GYLRIPNKFA KANGLINKDC GLIIRDERQR SWNLRIYTSC SQVYMGGRWG  180
EFRAANDIKA GDQIMFEVVS NGEQPVWKFH GK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754474e-94HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016549309.11e-137PREDICTED: putative B3 domain-containing protein REM15 isoform X5
RefseqXP_016549314.11e-137PREDICTED: B3 domain-containing protein REM14-like isoform X6
RefseqXP_016549320.11e-137PREDICTED: B3 domain-containing protein REM14-like isoform X7
TrEMBLA0A2G3ANJ41e-138A0A2G3ANJ4_CAPAN; Uncharacterized protein
STRINGXP_009612433.11e-102(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.13e-26B3 family protein