PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g29780
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family B3
Protein Properties Length: 182aa    MW: 21486.1 Da    PI: 4.6136
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g29780genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.14.2e-1569154589
                 -..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
          B3   5 ltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 
                 +++ + l++g +++p +fa ++   + +k  +  +++  ++ rsW+++l    ++ + ++++GW+ F  +n LkegD ++F+ + + ++
  CA01g29780  69 TIRQYCLSKGFMWIPQHFAFANgliNRNKMFG-LIIIDERQTRSWNLTL--HSCKTQAYIADGWRTFSADNCLKEGDRIIFEIVAKgET 154
                 56789999***********9**5443333333.455556888*******..999999*************************8765233 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.8E-1563159IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-1564159IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.30865165IPR003340B3 DNA binding domain
SMARTSM010192.1E-666162IPR003340B3 DNA binding domain
PfamPF023623.8E-1269153IPR003340B3 DNA binding domain
CDDcd100179.04E-973147No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MEFDVSIFDS THCDTKYAEY MQILEEKDKK VEDKNEDDEV VEDENDEEDE DDEAYTHDKP  60
FGQSHFEFTI RQYCLSKGFM WIPQHFAFAN GLINRNKMFG LIIIDERQTR SWNLTLHSCK  120
TQAYIADGWR TFSADNCLKE GDRIIFEIVA KGETQIWKFQ VVNNAKKLMR KFQGKFLMLY  180
S*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016557431.14e-76PREDICTED: B3 domain-containing protein REM17-like
TrEMBLA0A1U8FDW59e-75A0A1U8FDW5_CAPAN; B3 domain-containing protein REM17-like
STRINGPGSC0003DMT4000941518e-57(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24650.11e-10DNA binding;DNA binding;sequence-specific DNA binding transcription factors