PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g30350
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family HSF
Protein Properties Length: 474aa    MW: 52893 Da    PI: 4.6458
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g30350genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.51.9e-321859102
                   HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS
  HSF_DNA-bind   9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkks 102
                   +++d+++++++sws+++nsfvv+d+ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++i r+k 
    CA01g30350   1 MVDDSSTDKIVSWSATNNSFVVWDPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKSISRRKP 85 
                   899***********999*****************************************999.........*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.77E-31183IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.4E-50183IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.1E-34183IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.2E-28183IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-103244IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043403357IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-104557IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MVDDSSTDKI VSWSATNNSF VVWDPPEFAR DLLPKYFKHN NFSSFVRQLN TYGFRKVDPD  60
RWEFANEGFL RGQKHLLKSI SRRKPAHGHT QQQQQPHGQN ASACVEVGKF GLEEEVERLK  120
RDKNVLMQEL VRLRQQQQTT DNQLQGMVQR LQGMEQRQQQ MMSFLAKAVN SPGFLQQFVQ  180
QQNESNKRIT EGSKKRRIKQ DIVSRDHSVT PADGQIVKYQ PMMNEAAKAM LRELSKLDSS  240
PRLENFSNSP ESFLDGSPPS NASSTRVSGV TLQEVPPTSG QPLLNTVSAI AGQSMSPSTS  300
EIQSSRIGTS PEIANNQFAD ISSLVGSQDL PPCSLPASDI IMPELSQLPE ILPENNIDII  360
GSEMEHDSFM DTAVGVDGKM PLDIGSFSPD PLEWQTGLLD DIQEFPSVGD PFWEKFLQSP  420
SPGETEEMES AVMDDTSNTS ETKPQENGWN KTQNMEQLTE QMGLLTSNNQ KAI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B9e-2318336129Heat shock factor protein 1
5d5v_B9e-2318336129Heat shock factor protein 1
5d5v_D9e-2318336129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1193198KKRRIK
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX676000.0X67600.1 L.peruvianum Lp-hsf8 mRNA for heat stress transcription factor 8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016550837.10.0PREDICTED: heat shock factor protein HSF8-like
SwissprotQ401520.0HSF8_SOLLC; Heat shock factor protein HSF8
TrEMBLA0A2G3ANS50.0A0A2G3ANS5_CAPAN; Heat shock factor protein HSF8
STRINGPGSC0003DMT4000460000.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64131931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-118heat shock transcription factor A1D
Publications ? help Back to Top
  1. Zhu B, et al.
    Identification and characterization of a novel heat shock transcription factor gene, GmHsfA1, in soybeans (Glycine max).
    J. Plant Res., 2006. 119(3): p. 247-56
    [PMID:16570125]
  2. Cai SY, et al.
    HsfA1a upregulates melatonin biosynthesis to confer cadmium tolerance in tomato plants.
    J. Pineal Res., 2017.
    [PMID:28095626]
  3. Zhou J, et al.
    Heat Shock Factor HsfA1a Is Essential for R Gene-Mediated Nematode Resistance and Triggers H2O2 Production1.
    Plant Physiol., 2018. 176(3): p. 2456-2471
    [PMID:29339397]