PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g30900
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 212aa    MW: 23151.3 Da    PI: 10.0083
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g30900genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.71.2e-211663348
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T..TSEEEE CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss..tgklye 48
                 +n+sn qvtfskRr g++KKA+EL++LC+ae+a+++fs+   +k+y 
  CA01g30900 16 MKNESNMQVTFSKRRVGLFKKASELCTLCGAEIAIVVFSPgkANKVYS 63
                58************************************9722456665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-27667IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.698654IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-22783IPR002100Transcription factor, MADS-box
CDDcd001202.12E-26766No hitNo description
PRINTSPR004045.9E-16828IPR002100Transcription factor, MADS-box
PfamPF003195.5E-231564IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-162843IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-164364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MARLCKGRKK VEIVKMKNES NMQVTFSKRR VGLFKKASEL CTLCGAEIAI VVFSPGKANK  60
VYSFGHXKPT KFTPLATFQD LPPPNDDDRY NHLIRAHRNT GQRGLNKEVM DIQESLQKVK  120
AIGKSLLESG RGAYDRVCES PIIEGLSLSQ LEQLKEALEA QKRKVEFEAK LQQMGSDAPH  180
PFLTFGSALS STSGDGASSS HGPNVGAPFP N*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016581984.11e-130PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A2G2Y3461e-154A0A2G2Y346_CAPAN; Uncharacterized protein
STRINGSolyc01g106730.1.14e-64(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-36AGAMOUS-like 62