PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g30910
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 227aa    MW: 24523.9 Da    PI: 9.4897
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g30910genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.71.9e-201663348
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T..TSEEEE CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss..tgklye 48
                 +n+sn qvtfskRr g++KKA+EL+ LC+ae+a+++fs+   +k+y 
  CA01g30910 16 MKNESNMQVTFSKRRVGLFKKASELCNLCGAEIAIVVFSPgkANKVYS 63
                58************************************9722456665 PP
2SRF-TF38.91.1e-1267981948
                HHHHHHHHHHHHHT-EEEEEEE-T..TSEEEE CS
      SRF-TF 19 gilKKAeELSvLCdaevaviifss..tgklye 48
                g++KKA+EL++LC+ae+a+++fss   +k+y 
  CA01g30910 67 GLFKKASELCTLCGAEIAIVVFSSgkANKVYS 98
                9*********************9722456665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.9E-24664IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.306654IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.79E-20764IPR002100Transcription factor, MADS-box
CDDcd002665.14E-24774No hitNo description
PRINTSPR004042.7E-15828IPR002100Transcription factor, MADS-box
PfamPF003194.1E-221564IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-152843IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-154364IPR002100Transcription factor, MADS-box
SMARTSM004320.001366102IPR002100Transcription factor, MADS-box
PROSITE profilePS5006610.5126790IPR002100Transcription factor, MADS-box
PfamPF003193.9E-136799IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-1367129IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MARLRKGRKK VEIVKMKNES NMQVTFSKRR VGLFKKASEL CNLCGAEIAI VVFSPGKANK  60
VYSFGXGLFK KASELCTLCG AEIAIVVFSS GKANKVYSFG HPSVELLVDR AHRNTGQRGL  120
NKEVMDMQES LQKEKAIGKS LLESGRGAYD RVCESPIIEG LSLSQLEQLK EALEDQKRKV  180
EFEAELQQMG SDAPLPFLTF GSALSSTSGD GASSSHGPNV GAPFPN*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016581984.11e-113PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A2G2Y3841e-162A0A2G2Y384_CAPAN; Uncharacterized protein
STRINGSolyc01g106730.1.13e-54(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-33AGAMOUS-like 62