PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g30970
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 202aa    MW: 22991.2 Da    PI: 10.1077
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g30970genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.62.1e-202069149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs.stgklyey 49
                k+i+n+  r+vtfskRr g++KKA+EL++L++ae+ +++ s ++++l+++
  CA01g30970 20 KPIDNQNSRHVTFSKRRSGLFKKASELCILTGAEIVILVQSlKRQRLFTF 69
                78*************************************99567889888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006619.3711260IPR002100Transcription factor, MADS-box
SMARTSM004328.1E-221272IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-211491IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-101434IPR002100Transcription factor, MADS-box
PfamPF003191.2E-192269IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-103449IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MNVNTNTVKK TQGWRKIAIK PIDNQNSRHV TFSKRRSGLF KKASELCILT GAEIVILVQS  60
LKRQRLFTFG HPSADAVIDR YLTGKSSSSL SSSTNNEFNL QKNNQYFFQV CKDLEAEKKK  120
KENIEEAKMV NIDSNNSDNV GCWWYEPIET KDIDELEQFM VALEKLKKNV TTRADELSLL  180
NGSSSLNSTM KRARFGLRIN F*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016549469.11e-102PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A2G2Y3C01e-146A0A2G2Y3C0_CAPAN; MADS-box transcription factor 23
STRINGSolyc01g106700.2.19e-93(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21342252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-27AGAMOUS-like 62