PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g31010
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 215aa    MW: 23690.9 Da    PI: 9.8754
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g31010genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.41.6e-221663348
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT..SEEEE CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst..gklye 48
                 +n+sn qvtfskRr+g++KKA+EL++LC+ae+a+++fs++  +k+y 
  CA01g31010 16 MKNESNMQVTFSKRRAGLFKKASELCTLCGAEIAIVVFSPSkaNKVYS 63
                58************************************9862245555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.74656IPR002100Transcription factor, MADS-box
SMARTSM004322.1E-29667IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.15E-24778IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-16828IPR002100Transcription factor, MADS-box
PfamPF003199.2E-241564IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-162843IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-164364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MTRLRKGRKK VKIVKMKNES NMQVTFSKRR AGLFKKASEL CTLCGAEIAI VVFSPSKANK  60
VYSFGHPSVE LLVDTFLGRD LPPPNDDDRH NHLIRAHRNT GQRGLNKEVM DMPESLQKEK  120
AVGKSLLESG RGAYDRVCES PIIEGLSLSQ LEQLKEAXKA LESQKRKVEF EAELQQIGSD  180
APMPFLTFGS ALSLTGGDRE SSSYGPNVGA HFPN*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016581985.11e-151PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A2G2Y3961e-155A0A2G2Y396_CAPAN; Uncharacterized protein
STRINGSolyc01g106730.1.18e-74(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-33AGAMOUS-like 62