PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g31020
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 211aa    MW: 23053.3 Da    PI: 9.223
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g31020genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.23.3e-211763448
                -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T..TSEEEE CS
      SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifss..tgklye 48
                +n+sn qvtfskRr+ ++KKA+EL++LC+ae+a+++fs+   +k+y 
  CA01g31020 17 KNESNMQVTFSKRRASLFKKASELCTLCGAEIAIVVFSPgkANKVYS 63
                89***********************************9722456665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.717654IPR002100Transcription factor, MADS-box
SMARTSM004325.8E-26667IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.16E-23779IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-14828IPR002100Transcription factor, MADS-box
PfamPF003191.8E-221764IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-142843IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-144364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MPRMSKGRKK VEIVEMKNES NMQVTFSKRR ASLFKKASEL CTLCGAEIAI VVFSPGKANK  60
VYSFGHPSVE LLVDTFLGRD LPPPNDDDRH NHLIRAHRNT SQRGLNKEVM DMQESLQKEK  120
AIGKSLLESG RGAYDRVCES PIIEGLSLSQ LEQLKEALEA QKRKVEFEAK LQQMGSAPLP  180
FLTFGSALSP TSGDGASSSH GPNVGAPFPN *
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016581984.11e-154PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A1U8HN741e-153A0A1U8HN74_CAPAN; agamous-like MADS-box protein AGL62
STRINGSolyc01g106730.1.13e-75(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-44AGAMOUS-like 62