PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g31260
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MIKC_MADS
Protein Properties Length: 233aa    MW: 26512.2 Da    PI: 9.7665
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g31260genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.63.3e-281160251
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                ri+n++ rqvtfskRrng+lKKA+EL +LCda+v +iifsstgklye++s
  CA01g31260 11 RIDNTTSRQVTFSKRRNGLLKKAKELAILCDAQVGLIIFSSTGKLYEFAS 60
                9***********************************************86 PP
2K-box78.91.3e-2682171998
       K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                 +  ++ + +q+e++ L+++++ Lq+++R+llGe+L+ Ls k+L +Le+q+e slk +R++K+++l+++i+el +k + +++en +L kk+
  CA01g31260  82 NPMSEVKFWQREVSSLRQQLHCLQENHRKLLGEELSGLSTKDLTNLENQIEMSLKGVRKQKEQILTDEIRELNRKGNLIHQENVELYKKV 171
                 6678899********************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.4E-40261IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.623262IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-32384IPR002100Transcription factor, MADS-box
CDDcd002652.12E-43375No hitNo description
PROSITE patternPS003500458IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-28424IPR002100Transcription factor, MADS-box
PfamPF003192.5E-251158IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-282439IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-283960IPR002100Transcription factor, MADS-box
PfamPF014861.5E-2586171IPR002487Transcription factor, K-box
PROSITE profilePS5129714.6687177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
EMGRGKIVIQ RIDNTTSRQV TFSKRRNGLL KKAKELAILC DAQVGLIIFS STGKLYEFAS  60
NSMRSTIDRY NKIKEENNNL MNPMSEVKFW QREVSSLRQQ LHCLQENHRK LLGEELSGLS  120
TKDLTNLENQ IEMSLKGVRK QKEQILTDEI RELNRKGNLI HQENVELYKK VNLIQQEYTE  180
LQKQGCGSEP NGGVQATHTI RNGYDLHAPI NLQLSQPQTQ KNGTSTSVMQ LG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-19275174MEF2C
5f28_B2e-19275174MEF2C
5f28_C2e-19275174MEF2C
5f28_D2e-19275174MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016539377.11e-168PREDICTED: MADS-box transcription factor 23-like isoform X2
SwissprotQ9SZJ61e-95AGL21_ARATH; Agamous-like MADS-box protein AGL21
TrEMBLA0A1U8DWI01e-166A0A1U8DWI0_CAPAN; MADS-box transcription factor 23-like isoform X2
STRINGXP_009612439.11e-147(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA6792056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.15e-98AGAMOUS-like 21
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Yu LH, et al.
    Arabidopsis MADS-Box Transcription Factor AGL21 Acts as Environmental Surveillance of Seed Germination by Regulating ABI5 Expression.
    Mol Plant, 2017. 10(6): p. 834-845
    [PMID:28438576]
  3. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  4. Sun CH, et al.
    Chrysanthemum MADS-box transcription factor CmANR1 modulates lateral root development via homo-/heterodimerization to influence auxin accumulation in Arabidopsis.
    Plant Sci., 2018. 266: p. 27-36
    [PMID:29241564]