PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g31320
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family B3
Protein Properties Length: 271aa    MW: 31330.1 Da    PI: 4.9041
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g31320genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.24e-102454693
                EEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3 46 WevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
                W++++  +k++++++++ GW +F ++n ++ gDf++F +dg+  f   
  CA01g31320  2 WTIEV--TKTGREFYFQYGWVKFIEDNTVEFGDFFIFDYDGNGIF--D 45
                99999..********************************998766..3 PP
2B334.92.6e-111712471290
                 HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
          B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                 ++++l +p + ++ +++k   +  +t++d+ gr++e k++ +k + r++lt+GW++ ++ n  + +D ++ ++++  +++
  CA01g31320 171 RRNQLFIPLDVVRGYKLK--LPSSMTIRDSVGREFEAKCKSWKDG-RIFLTGGWSRLCRWNLAEKNDLCICEFVRGeRNK 247
                 5789***********999..55569999***********988885.889*********************9988553444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.858152IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-9254IPR015300DNA-binding pseudobarrel domain
PfamPF023621.5E-7244IPR003340B3 DNA binding domain
SuperFamilySSF1019361.14E-10256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-15156244IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-16157243IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.713160259IPR003340B3 DNA binding domain
SMARTSM010191.0E-4163259IPR003340B3 DNA binding domain
PfamPF023621.2E-9171247IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MWTIEVTKTG REFYFQYGWV KFIEDNTVEF GDFFIFDYDG NGIFDFKLLG KTGCEKKGVG  60
GLKLDVKEEE EEEISVENRK NVQSKAKNWA SDSTSSSSDD DSDEECYMVE EEEEEDEEYE  120
ETEKVPCSIH RYVAVCKARD RHDPLGTDIF RSGRATPPKN PYFVAKIIPK RRNQLFIPLD  180
VVRGYKLKLP SSMTIRDSVG REFEAKCKSW KDGRIFLTGG WSRLCRWNLA EKNDLCICEF  240
VRGERNKGLY LQVQFLHEGA SSHLNEKNIN *
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016582325.10.0PREDICTED: B3 domain-containing protein At5g60130-like isoform X1
RefseqXP_016582326.10.0PREDICTED: B3 domain-containing protein At5g60130-like isoform X2
RefseqXP_016582327.10.0PREDICTED: B3 domain-containing protein At5g60130-like isoform X3
TrEMBLA0A1U8HFY10.0A0A1U8HFY1_CAPAN; B3 domain-containing protein At5g60130-like isoform X3
TrEMBLA0A1U8HG210.0A0A1U8HG21_CAPAN; B3 domain-containing protein At5g60130-like isoform X2
TrEMBLA0A1U8HG300.0A0A1U8HG30_CAPAN; B3 domain-containing protein At5g60130-like isoform X1
STRINGPGSC0003DMT4000276731e-113(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10912264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60140.12e-11B3 family protein