PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g32360
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family B3
Protein Properties Length: 144aa    MW: 16160.7 Da    PI: 8.5814
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g32360genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.55.7e-1423104488
                 E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
          B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                  +++++ l+ + l+lp +f+++ g+ + ++ +++l+ e  r W+v +   k++ ++ +  GW++F  +ngL++gD+  F+l+++ 
  CA01g32360  23 STVKPYCLRCAALYLPTDFVKSSGLMN-RNCEMILKGEAQRCWSVWF--GKSGHHFGIIHGWEKFRAENGLQVGDVYKFELIKNG 104
                 567889999999********9997774.5569***************..9999999999*********************99863 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.92E-2015112IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-1815112IPR015300DNA-binding pseudobarrel domain
CDDcd100172.37E-1519113No hitNo description
SMARTSM010193.1E-1420118IPR003340B3 DNA binding domain
PROSITE profilePS5086312.01220114IPR003340B3 DNA binding domain
PfamPF023621.8E-1222105IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MSVLNAQVAT STSGDDDYPC FVSTVKPYCL RCAALYLPTD FVKSSGLMNR NCEMILKGEA  60
QRCWSVWFGK SGHHFGIIHG WEKFRAENGL QVGDVYKFEL IKNGKVPIAQ FHCKCSFSSN  120
VLLSSSSSMF RRCNLIFKQF DHL*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016555130.14e-80PREDICTED: B3 domain-containing protein REM7-like
TrEMBLA0A2G3ANH43e-82A0A2G3ANH4_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000676641e-57(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24680.12e-15B3 family protein