PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g34460
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family WRKY
Protein Properties Length: 282aa    MW: 32009.6 Da    PI: 8.6186
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g34460genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.94.2e-28133193259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                 dDgy+WrKYGqK++ g+++prsYYrCt++   +C+++k+v+rs++d +v eitY+g+Hn++
  CA01g34460 133 DDGYSWRKYGQKHILGAKYPRSYYRCTYRhmqNCWATKQVQRSDDDATVYEITYRGSHNCR 193
                 8**************************99899***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.1E-28124194IPR003657WRKY domain
SuperFamilySSF1182904.32E-25131194IPR003657WRKY domain
SMARTSM007741.7E-38132194IPR003657WRKY domain
PROSITE profilePS5081121.333133191IPR003657WRKY domain
PfamPF031066.8E-26133193IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MDCSFNWQYK TLINELTRGI EHAKQLKAYL SSVASTSENQ ELLLQKILSS YEQSLVILKR  60
TGSTVHSSKP LPPMCGAIES SVSVDGSPKS DDKKRCFKEH QELLDISKKR KSQLTRTEQV  120
KVSAESGFEG PTDDGYSWRK YGQKHILGAK YPRSYYRCTY RHMQNCWATK QVQRSDDDAT  180
VYEITYRGSH NCRQATNRAS LEKQELKKQA VYQTGQQYSN QALMNSRANL KVDTDDLEKN  240
ETACPFSFPP TFSGLTDENQ HFQISDVDDN RTTSQSQAAA R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-18133193969OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
192110KKRCFKEHQELLDISKKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019233122.11e-157PREDICTED: probable WRKY transcription factor 53
TrEMBLA0A2G3AP920.0A0A2G3AP92_CAPAN; Uncharacterized protein
STRINGXP_009768979.11e-156(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18432467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.11e-59WRKY family protein