PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g34470
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family WRKY
Protein Properties Length: 365aa    MW: 41273.6 Da    PI: 6.5689
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g34470genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.94.1e-28136196259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                 dDgy+WrKYGqK++ g+++prsYYrCt++   +C+++k+v+rs++dp+v+++tY+g+H ++
  CA01g34470 136 DDGYSWRKYGQKDILGAKYPRSYYRCTYRhmqNCWATKQVQRSDDDPTVFDVTYRGSHSCH 196
                 8**************************99899**************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-27131197IPR003657WRKY domain
SuperFamilySSF1182907.59E-25134196IPR003657WRKY domain
SMARTSM007743.8E-38135197IPR003657WRKY domain
PfamPF031063.2E-26136196IPR003657WRKY domain
PROSITE profilePS5081121.54136194IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MDCAVNWEYK TLINELTQGI EHTKQLRAHF SSVDSTIQNQ ELLLQKILSS YEQSLLILKC  60
SVGGSMVQSS SAMMPTCGVI ESSVVSVYGS PKSDDKKRSF QDHHEVIDIS KKRKLQPTWT  120
EQVKVSPKSG FEGPTDDGYS WRKYGQKDIL GAKYPRSYYR CTYRHMQNCW ATKQVQRSDD  180
DPTVFDVTYR GSHSCHHATY YVQQSTSPEK REFKKEAVYQ NRQNYSTQAL MSLRANLRVD  240
TNDLDKNEQA ACHFSFPPTF SSGLTDENHR RFQISHVDEN LIGSGYSASF VSPTTPESNY  300
FSVSSSSQMN GYGMIHNLNH SESDLTDIFS ANTSTTSSPI VGDFSLDNLE LDTNFPFNNP  360
NFFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A8e-19136195968OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195113KKRSFQDHHEVIDISKKRK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ3608440.0FJ360844.1 Capsicum annuum WRKY transcription factor-30 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001311621.10.0probable WRKY transcription factor 53
TrEMBLA0A2G3APB80.0A0A2G3APB8_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000149490.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18432467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.19e-66WRKY family protein