PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g34480
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family WRKY
Protein Properties Length: 308aa    MW: 34546.2 Da    PI: 8.1897
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g34480genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY79.92.7e-25135196159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGq ++ g+ +prsYYrC +    gC ++k+v+rs++d +++eitY+++H+++
  CA01g34480 135 LDDGYSWRKYGQTKILGAYYPRSYYRCRYWllkGCAATKQVQRSNDDITIFEITYKNSHTCR 196
                 59**************************97788***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.115130193IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.4E-26132197IPR003657WRKY domain
SuperFamilySSF1182903.66E-23134196IPR003657WRKY domain
SMARTSM007741.6E-29135197IPR003657WRKY domain
PfamPF031064.1E-23136196IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MDCVFTWDYN SLINELTQGM EHTKQLKTYL SSVPSTSEST PNSLLQKILS SYEKSLLILK  60
WTGSTVQSLQ PLPPTGGAIE PPPAASDDRS HNCDDKKRSF NDHTELIDSS NKRKSQPRWT  120
KQVNVRTGRG FEGPLDDGYS WRKYGQTKIL GAYYPRSYYR CRYWLLKGCA ATKQVQRSND  180
DITIFEITYK NSHTCREVTN SALQPKSPEK QANHQTPTVD GYSPSFASPT ATESNYLSVS  240
GSQMNSFGRV HNSNHSESYL SDIGIIQNLY HSDSDRTYTL SANTSTTSSS IEGMDVQWAE  300
FRQVKVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-151351931474Disease resistance protein RRS1
5w3x_D3e-151351931474Disease resistance protein RRS1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016552320.10.0PREDICTED: probable WRKY transcription factor 53
TrEMBLA0A2G3AP800.0A0A2G3AP80_CAPAN; Uncharacterized protein
STRINGXP_009604630.11e-104(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18432467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.17e-41WRKY family protein