PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA01g34600

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Nin-like

Protein Properties

Length: 931aa MW: 101545 Da PI: 7.0216

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA01g34600	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	93.2	1.8e-29	535	586	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yFs+++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ CA01g34600 535 AEKTISLEVLQQYFSGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 586 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.666	525	606	IPR003035	RWP-RK domain
Pfam	PF02042	8.6E-27	538	586	IPR003035	RWP-RK domain
Gene3D	G3DSA:3.10.20.240	3.8E-24	835	916	No hit	No description
SuperFamily	SSF54277	2.71E-21	835	920	No hit	No description
SMART	SM00666	1.8E-23	835	917	IPR000270	PB1 domain
PROSITE profile	PS51745	22.627	835	917	IPR000270	PB1 domain
CDD	cd06407	1.11E-32	836	914	No hit	No description
Pfam	PF00564	1.2E-17	836	914	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 931 aa Download sequence Send to blast
MNLSLVCPRG KGVNELNVHH WPVTHNEVII YLPFIFGADT GDPEATTETV AVNADKGRIP 60 PPTSGLIPGN NPDGSCIIKE RMSQALRYLK ESTRERVLAQ VWAPVKEAGR SVLTTSGQPF 120 VLDPDCNGLH QYRTVSLMYM FAADGDTGGV LGLPGRVFRL KLPEWTPNVQ YYSSKEFHRL 180 DHALHYNVRG TLALPVFEPS GQSCVGVLEL IMTSQKINYA AEVDKVCKAL KAVNLKSSEI 240 LDHPNTQVNG MGYMNQICNE GRQNALVEIL EILTAVCETY KLPLAQTWVP CRHRSVLADG 300 GGLKKSCSSF DGSCMGQICM STTDVSFYVV DAHMWGFREA CAEHHLQKGQ GVAGRAYASQ 360 RSCFCEDITQ FCKTEYPLVH YARLFGLTSC FAICLRSSLT GNDDYILEFF LPPDSRDYND 420 QQALFNSLFV TMKQHFRSLR IASGGELEHD WSSVEIIKAS TEEKIDTKPE SVPVLKSLPQ 480 PTSLPNGSTH LDLLREQQLA AGSVVAKGAG EAPNGVSNAD NKVVGKKSEK KRGKAEKTIS 540 LEVLQQYFSG SLKDAAKSLG VCPTTMKRIC RQHGISRWPS RKINKVNRSL SKLKCVIESV 600 QGAEGTFTLT SLAPNSLPAA VSSISWPNGA NGSNLPSSPS SKPSVFHEEK NEFIAHGTPE 660 SREEAEPSNE MLGGRISRKE ELSPPQNGFL HAEGSRKSRT GSVSKEESAG TPTSHGSCQG 720 SPNAGNEFSP SNELVNSPAR ELCMKVGGSL EASHQTTKEI SLGSLKGKTK HNQKLFRGML 780 VEDAGSSHDL RNLCSPGDAL VDERVQEYNL TNPPFSDATA KDPVYVHAAW PEVTSVTIKA 840 TYKDDIIRFR LSLSSGIFKL KEEVAKRLKL ELGTFDIKYL DDDLELVSIS CDADLQECVD 900 ISRSSGSSIV RLLVLDIMSN LGSSCESSGK *

Sequence ? help Back to Top

Protein Sequence Length: 931 aa Download sequence Send to blast

MNLSLVCPRG KGVNELNVHH WPVTHNEVII YLPFIFGADT GDPEATTETV AVNADKGRIP  60
PPTSGLIPGN NPDGSCIIKE RMSQALRYLK ESTRERVLAQ VWAPVKEAGR SVLTTSGQPF  120
VLDPDCNGLH QYRTVSLMYM FAADGDTGGV LGLPGRVFRL KLPEWTPNVQ YYSSKEFHRL  180
DHALHYNVRG TLALPVFEPS GQSCVGVLEL IMTSQKINYA AEVDKVCKAL KAVNLKSSEI  240
LDHPNTQVNG MGYMNQICNE GRQNALVEIL EILTAVCETY KLPLAQTWVP CRHRSVLADG  300
GGLKKSCSSF DGSCMGQICM STTDVSFYVV DAHMWGFREA CAEHHLQKGQ GVAGRAYASQ  360
RSCFCEDITQ FCKTEYPLVH YARLFGLTSC FAICLRSSLT GNDDYILEFF LPPDSRDYND  420
QQALFNSLFV TMKQHFRSLR IASGGELEHD WSSVEIIKAS TEEKIDTKPE SVPVLKSLPQ  480
PTSLPNGSTH LDLLREQQLA AGSVVAKGAG EAPNGVSNAD NKVVGKKSEK KRGKAEKTIS  540
LEVLQQYFSG SLKDAAKSLG VCPTTMKRIC RQHGISRWPS RKINKVNRSL SKLKCVIESV  600
QGAEGTFTLT SLAPNSLPAA VSSISWPNGA NGSNLPSSPS SKPSVFHEEK NEFIAHGTPE  660
SREEAEPSNE MLGGRISRKE ELSPPQNGFL HAEGSRKSRT GSVSKEESAG TPTSHGSCQG  720
SPNAGNEFSP SNELVNSPAR ELCMKVGGSL EASHQTTKEI SLGSLKGKTK HNQKLFRGML  780
VEDAGSSHDL RNLCSPGDAL VDERVQEYNL TNPPFSDATA KDPVYVHAAW PEVTSVTIKA  840
TYKDDIIRFR LSLSSGIFKL KEEVAKRLKL ELGTFDIKYL DDDLELVSIS CDADLQECVD  900
ISRSSGSSIV RLLVLDIMSN LGSSCESSGK *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975447	0.0	HG975447.1 Solanum pennellii chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016554555.1	0.0	PREDICTED: protein NLP7-like isoform X1
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A2G3AP94	0.0	A0A2G3AP94_CAPAN; Protein NLP7
STRING	XP_009599820.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5223	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]