PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g34800
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family B3
Protein Properties Length: 378aa    MW: 42481.2 Da    PI: 8.1225
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g34800genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B399.91.6e-3174179199
                 EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefel 92 
                 f+kv tpsdv+k++rlv+pk++ae++     +++ +++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+ s+ +l
  CA01g34800  74 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldsSSNDKGGLLLNFEDSNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGtGElSKHRL 172
                 89****************************955666889*************************************************76699999999 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 ++ ++r+
  CA01g34800 173 FIDWRRR 179
                 9999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.9E-4167182IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-3271183IPR015300DNA-binding pseudobarrel domain
CDDcd100176.90E-2572162No hitNo description
PfamPF023623.3E-2974179IPR003340B3 DNA binding domain
PROSITE profilePS5086314.29774180IPR003340B3 DNA binding domain
SMARTSM010192.1E-2174180IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MNFFGSRREI QQEEADSSKG MCPFSSSASS SSYQQKRPSS NESSTELMLM DSSPVDGGED  60
PHHHPGMIER EHMFDKVVTP SDVGKLNRLV IPKQHAEKYF PLDSSSNDKG GLLLNFEDSN  120
GKPWRFRYSY WNSSQSYVMT KGWSRFVKEK KLDAGDIVSF QRGTGELSKH RLFIDWRRRP  180
DHDINNHYML PPHHFSNGRL FPLHPYPTTY SHNLLLEGGG SSNISITQRP NYYNPHSYIY  240
GIGGNSNNTT TTSTPYYMMS TSFNNNSTMA TMVNGNPFNN VMMRSGAAEQ GCSTNRSVVE  300
PRVFNSVPVV QGKVAAKRLR LFGVNMDCPM DHSDMSSIPT TTTSSYLQFS SSLRNFNNSP  360
MPSEESSEKG KSFDLDI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-63671801114B3 domain-containing transcription factor NGA1
5os9_B2e-63671801114B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016556549.10.0PREDICTED: B3 domain-containing protein Os03g0120900-like
SwissprotO827992e-69NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLA0A1U8FJR40.0A0A1U8FJR4_CAPAN; B3 domain-containing protein Os03g0120900-like
STRINGPGSC0003DMT4000150111e-155(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28172350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.16e-67B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  5. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  6. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]