PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g00130
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 177aa    MW: 20072.9 Da    PI: 9.1239
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g00130genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS36.37.7e-1210703396
        GRAS 33 pdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96
                  g+pmq l ay++e+L ++l++ +s++ykal+++e     s+e +++++l++e++P++kf++l
  CA02g00130 10 VCGSPMQCLGAYMLEGLVTKLVSLGSSIYKALRCKEPI---SIELFSYMHLLYEICPYFKFGYL 70
                5689*********************************9...9********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098510.5251176IPR005202Transcription factor GRAS
PfamPF035142.6E-91070IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MSELRTVGFV CGSPMQCLGA YMLEGLVTKL VSLGSSIYKA LRCKEPISIE LFSYMHLLYE  60
ICPYFKFGYL YGAISLIHAL TAWPGRPPRI HITRIDDSIS DYARGGGIEI VGQRLSALLY  120
LATYLLNFIP WLFLVLMLRS RILMFGLGNH WQSTLLSFYT ICTIRVLELK ITEKKF*
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016581393.12e-54PREDICTED: scarecrow-like transcription factor PAT1
SwissprotQ8GVE11e-41CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLA0A1U8HJK14e-53A0A1U8HJK1_CAPAN; Chitin-inducible gibberellin-responsive protein 2
TrEMBLA0A2G2WFJ64e-53A0A2G2WFJ6_CAPBA; Scarecrow-like protein 5
TrEMBLA0A2G2Z5R24e-53A0A2G2Z5R2_CAPAN; scarecrow-like transcription factor PAT1
TrEMBLA0A2G3C2K74e-53A0A2G3C2K7_CAPCH; Chitin-inducible gibberellin-responsive protein 2
STRINGPGSC0003DMT4000571112e-53(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.24e-40GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]