PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g01490
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family B3
Protein Properties Length: 333aa    MW: 37820.6 Da    PI: 4.9086
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g01490genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.13.1e-13301121098
                 HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 +++++rl++p  f +++ ++  ++  + le +sg++Wev +  + + g+++l++GWk+F +   +  g f++F ++ rs f  +v++f+
  CA02g01490  30 SHELCRLRIPEGFSSRYCKNMLNP--VFLEVPSGEVWEVDV--EHSEGHIWLAQGWKDFSDYYSISRGHFLIFGYNARSHF--NVTIFD 112
                 56789************5454444..***************..999999**************************999999..999987 PP
2B354.12.9e-17234316490
                 E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
          B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                  + +s+vl+ + l++p kfa ++ +++  s  l+l+ +   sW+vk+i+ +k+ +   t GWk Fv +n+Lk gD++v++++++++ 
  CA02g01490 234 FMHTSYVLRPHTLYIPLKFAMKYLMQN--SGNLVLRVPGRGSWSVKCIILRKDAK--VTCGWKAFVLDNKLKYGDVCVLEVINDTKL 316
                 5779*******************6663..447***************88777766..79*********************9887444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.7E-1816114IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.39E-1717114IPR015300DNA-binding pseudobarrel domain
CDDcd100174.56E-1321112No hitNo description
SMARTSM010191.2E-723114IPR003340B3 DNA binding domain
PfamPF023629.9E-1029112IPR003340B3 DNA binding domain
PROSITE profilePS5086311.23735114IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.3E-21223318IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.61E-20224316IPR015300DNA-binding pseudobarrel domain
CDDcd100177.82E-18229325No hitNo description
PROSITE profilePS5086312.041231327IPR003340B3 DNA binding domain
SMARTSM010191.8E-11231327IPR003340B3 DNA binding domain
PfamPF023623.7E-15234316IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MVNKFRRKIG EASSISNITQ PKFGKIIFSS HELCRLRIPE GFSSRYCKNM LNPVFLEVPS  60
GEVWEVDVEH SEGHIWLAQG WKDFSDYYSI SRGHFLIFGY NARSHFNVTI FDLSAAEVDY  120
PIAEIESDDS IDISDVVEHS SENLSRGPLI EEGERKRQGG ETEDDDLQTN VIEEEESQGN  180
VVSPEISEVY KEHEQQTKIV TSESESEAER DQEIAENYQR AKAFKSKNPF IISFMHTSYV  240
LRPHTLYIPL KFAMKYLMQN SGNLVLRVPG RGSWSVKCII LRKDAKVTCG WKAFVLDNKL  300
KYGDVCVLEV INDTKLSLIE VTIFPGVSDS TN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-1418832415140B3 domain-containing transcription factor VRN1
4i1k_B1e-1418832415140B3 domain-containing transcription factor VRN1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2154043e-89AC215404.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0163K16, complete sequence.
GenBankHG9755143e-89HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016558927.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A2G3A5I50.0A0A2G3A5I5_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000071990.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7591893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-37B3 family protein