PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA02g01550

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Dof

Protein Properties

Length: 193aa MW: 20827.4 Da PI: 9.0739

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA02g01550	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.8	5.5e-39	26	85	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++++l+cprCdstntkfCyynny+lsqPr+fCk+CrryWt+GG+lr++P+Ggg+rkn k+ CA02g01550 26 PDQQLPCPRCDSTNTKFCYYNNYNLSQPRHFCKSCRRYWTHGGTLRDIPIGGGSRKNAKR 85 7899****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-27	25	84	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.0E-34	27	84	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.32	30	84	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	32	68	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MTLEASEKRV TKQQTAGGVL PPAQEPDQQL PCPRCDSTNT KFCYYNNYNL SQPRHFCKSC 60 RRYWTHGGTL RDIPIGGGSR KNAKRCRIYT STPFSSSTAV SPHGNSPFLV PLPTANQLLY 120 GSDVKPCLNM SGNNFTSLLS SHGPTGVLAL GGIEDVSFSI GRAAVWPFPG APDSFIRNYD 180 SGVGASMWQF SG*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin and salicylic acid (SA). {ECO:0000269\|PubMed:10758484}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016554611.1	1e-142	PREDICTED: dof zinc finger protein DOF3.4-like
Swissprot	Q39088	1e-39	DOF34_ARATH; Dof zinc finger protein DOF3.4
TrEMBL	A0A2G3A5P4	1e-141	A0A2G3A5P4_CAPAN; Dof zinc finger protein PBF
STRING	PGSC0003DMT400034111	1e-108	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4532	22	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50410.1	4e-42	OBF binding protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]