PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g01800
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family WRKY
Protein Properties Length: 254aa    MW: 28354.2 Da    PI: 9.6721
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g01800genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.21.1e-30182239359
                 -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ ++p+++++tYe+eHnh+
  CA02g01800 182 DDYSWRKYGQKPIKGSPHPRAYYKCSSVrGCPARKHVERALDEPTMLVVTYESEHNHS 239
                 99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.8E-17133178IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.805.3E-32168239IPR003657WRKY domain
PROSITE profilePS5081129.677175241IPR003657WRKY domain
SuperFamilySSF1182903.27E-26177239IPR003657WRKY domain
SMARTSM007743.7E-36180240IPR003657WRKY domain
PfamPF031064.5E-26182238IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MEIEIAADAA ITKFKKVNSL LDRFRTGHAR FRRAPIDNLK KDYVDPEVYC LTPIQQLPPS  60
AYDLNNNQIF QNPKQELVTK SINFSHAPEI WCANSFNMST LTGETESEQI SNLSQVSSAV  120
KPPLSSSSSF KIRKCTSSEN GFSGKCSGSS GRCHCSKRRK LRPKRVVRVP AISMKLSDIP  180
PDDYSWRKYG QKPIKGSPHP RAYYKCSSVR GCPARKHVER ALDEPTMLVV TYESEHNHSL  240
SVAETSSLIL ESS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-21168240273WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5388767e-56AJ538876.1 Nicotiana tabacum cDNA-AFLP-fragment BT2-M23-021.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006360211.11e-141PREDICTED: probable WRKY transcription factor 15
SwissprotO221762e-75WRK15_ARATH; Probable WRKY transcription factor 15
TrEMBLA0A2G3A5H30.0A0A2G3A5H3_CAPAN; Putative WRKY transcription factor 15
STRINGPGSC0003DMT4000655061e-141(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12202479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.18e-64WRKY DNA-binding protein 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Van Aken O, et al.
    Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.
    Plant Physiol., 2016. 171(3): p. 2150-65
    [PMID:27208304]
  3. Liu F, et al.
    Interactions of WRKY15 and WRKY33 transcription factors and their roles in the resistance of oilseed rape to Sclerotinia infection.
    Plant Biotechnol. J., 2018. 16(4): p. 911-925
    [PMID:28929638]